apple.sdau.edu.cn

applegene.org

AppleGFDB:The Apple Gene Function & Gene Family DataBase v1.0

http://www.applegene.org/Familist.asp

The Apple Gene Function and Gene Family DataBase v1.0. This part collected the gene families based on alignment to. Criteron was considered. Most genes in the same gene family have the similar protein structure and same functional domains. For these genes, we used MUSCLE (Edgar. 2004) to generate a multiple sequence alignment for each Arabidopsis gene family. The multiple sequence alignment was then input into SAM 3.5. To build a hidden Markov model (HMM) for each family. Every gene sequence was alig...

party.sdau.edu.cn

科学研究

http://party.sdau.edu.cn/s/1/t/2209/p/11/c/74/list.htm

party.sdau.edu.cn

科学研究

http://party.sdau.edu.cn/s/1/t/2209/p/12/c/74/list.htm

gfdb.sdau.edu.cn

AppleGFDB:The Apple Gene Function & Gene Family DataBase v1.0

http://gfdb.sdau.edu.cn/home.asp

The Apple Gene Function and Gene Family DataBase v1.0. Apple Gene Family Collection Finished. Blast and Tools finished. Apple Gene Function and Gene Family Database. AppleGFDB) is supported by National Research Center for Apple Engineering and Technology. And State Key Laboratory of Crop Biology. The AppleGFDB aims to collect any information that is helpful for apple genome annotation. Provides genome sequence from apple (. Golden Delicious', Malus. And populus gene in PlantGDB. The protein domain struct...

gfdb.sdau.edu.cn

AppleGFDB:The Apple Gene Function & Gene Family DataBase v1.0

http://gfdb.sdau.edu.cn/Interpro.asp

The Apple Gene Function and Gene Family DataBase v1.0. Interpro search tool was designed for searching genes with a specific Interpro. Classification . You can find out genes by inputting a specific Interpro ID or specific key words (e.g. IPR004130. S lab at National Research Center for Apple Engineering and Technology. Web Site Designing and Administration Shizhong Zhang. IE 8 and 1600 900 Resolution Suggested.

web02.sdau.edu.cn

科学研究

http://web02.sdau.edu.cn/s/1/t/2209/p/12/c/74/list.htm

gfdb.sdau.edu.cn

AppleGFDB:The Apple Gene Function & Gene Family DataBase v1.0

http://gfdb.sdau.edu.cn/miRNA.asp

The Apple Gene Function and Gene Family DataBase v1.0. MicroRNAs (miRNA) are important regulators of post-transcriptional and translational gene expression. A total of 165 apple miRNAs were collected from the publication and the miRNA database and divided into 56 families in AppleGADB. This database provides information on genomic location, target gene, sequence of pre-miRNA and mature miRNA, the structure of the Pre-miRNA and so on. The Micro RNA data was collected according the following referrence :.

gfdb.sdau.edu.cn

AppleGFDB:The Apple Gene Function & Gene Family DataBase v1.0

http://gfdb.sdau.edu.cn/blastp.asp

The Apple Gene Function and Gene Family DataBase v1.0. This component provides users a chance to research a query nucleotide or protein sequence against all sequences stored in AppleGADB. User can submit a query sequence and change the BLAST paramters. After performing the BLAST search, the significantly hit genes are ranked basing on the e-value generated from every gene. In this component, the users also can provide query text ( FASTA format. Input Your Sequence in Fasta Format.

gfdb.sdau.edu.cn

AppleGFDB:The Apple Gene Function & Gene Family DataBase v1.0

http://gfdb.sdau.edu.cn/Familist.asp

The Apple Gene Function and Gene Family DataBase v1.0. This part collected the gene families based on alignment to. Criteron was considered. Most genes in the same gene family have the similar protein structure and same functional domains. For these genes, we used MUSCLE (Edgar. 2004) to generate a multiple sequence alignment for each Arabidopsis gene family. The multiple sequence alignment was then input into SAM 3.5. To build a hidden Markov model (HMM) for each family. Every gene sequence was alig...