bgf.genomics.org.cn

BGI Gene Finder Page

BGF: The Beijing Gene Finder (evaluation version 1.01). Please report bugs to: bgf@genomics.org.cn. Mirror site in Fudan University. BGF is written at the Beijing Genomics Institute (BGI). It is a hidden Markov model (HMM) and dynamic programming based ab initio. Gene prediction program. Input sequence length: [100, 500K]. It may accept multiple genomic sequences in FASTA format from a single file. Input your sequence and get your result:.

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BGF: The Beijing Gene Finder (evaluation version 1.01). Please report bugs to: bgf@genomics.org.cn. Mirror site in Fudan University. BGF is written at the Beijing Genomics Institute (BGI). It is a hidden Markov model (HMM) and dynamic programming based ab initio. Gene prediction program. Input sequence length: [100, 500K]. It may accept multiple genomic sequences in FASTA format from a single file. Input your sequence and get your result:.

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1 sequence

2 file upload

3 species

4 oryza sativa

5 bombyx mori

6 drosophila melanogaster

7 reference

8 test data sets

9 coupons

10 reviews

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BGI Gene Finder Page | bgf.genomics.org.cn Reviews

https://bgf.genomics.org.cn

BGF: The Beijing Gene Finder (evaluation version 1.01). Please report bugs to: bgf@genomics.org.cn. Mirror site in Fudan University. BGF is written at the Beijing Genomics Institute (BGI). It is a hidden Markov model (HMM) and dynamic programming based ab initio. Gene prediction program. Input sequence length: [100, 500K]. It may accept multiple genomic sequences in FASTA format from a single file. Input your sequence and get your result:.

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bgf.genomics.org.cn

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BGF User's guide

http://bgf.genomics.org.cn/Help.html

This is BGI (Beijing Genomics Institute) Gene Finding program homepage. It is a program based on DP (Dynamic Programming) and HSMM (Hidden Semi-Markov Model). The program takes sequence in FASTA or Flat format. Each time you can only submit one sequence. This is an example :. How to run it. The name of the local file in which you have the DNA sequence in the. Field, or paste the sequence into the. Window. Then choose. And press ` Submit. Gene# - predicted gene number, starting from start of sequence;.

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cucumber.genomics.org.cn

Cucumber Genome Database

http://cucumber.genomics.org.cn/page/cucumber/service.jsp

Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence database s regardless of whether the query is protein or DNA. It is more than a tool to view sequences aligned with each other or to calculate perce nt homology, but a program to locate regions of sequence similarity with a view to comparing structure and function.

tlife.fudan.edu.cn

Beijing Gene Finder Page

http://tlife.fudan.edu.cn/bgf

BGF: Beijing Gene Finder. Please report bugs to: Webmaster. BGF is written at the Beijing Genomics Institute (BGI). It is a hidden Markov model (HMM) and dynamic programming based ab initio. Gene prediction program. The size of input file is limited to 10MB. And there could be multiple sequences in your input file. Related publication: Test Data Sets and Evaluation of Gene Prediction Programs on the Rice Genome. Supplemental material, include OsSNG550, OsMTG62 and a README file can be downloaded from here.

rice.genomics.org.cn

Rice Genome Database

http://rice.genomics.org.cn/rice/link/ts.jsp

Repeat-masked Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error probabilities for each base. Clone-end-pairing information is used to construct scaffolds that order and orient the contigs. The updated version of RePS incorporates some of the ideas introduced by Phusion on clustering. Is an accurate tool for analyzing vertebrate gen...

rice.big.ac.cn

Rice Genome Database

http://rice.big.ac.cn/rice/link/ts.jsp

Repeat-masked Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error probabilities for each base. Clone-end-pairing information is used to construct scaffolds that order and orient the contigs. The updated version of RePS incorporates some of the ideas introduced by Phusion on clustering. Is an accurate tool for analyzing vertebrate gen...

rice.big.ac.cn

BGI Rise Rice Genome Database

http://rice.big.ac.cn/rice/index.jsp

Enter your search terms. Rice is a major food staple for the world's population and serves as a model species in cereal genome research. The Beijing Genomics Institute (BGI) has long been devoting itself to sequencing, information analysis, and biological research of the rice genome. Our Rice Information System (BGI-RIS) is targeted to be the most up-to-date integrated information resource for rice genomes as well as a workbench for comparative genomic analysis among cereal crops. Beijing Gene Finding), ...

rice.genomics.org.cn

BGI Rise Rice Genome Database

http://rice.genomics.org.cn/rice/index.jsp

Enter your search terms. Rice is a major food staple for the world's population and serves as a model species in cereal genome research. The Beijing Genomics Institute (BGI) has long been devoting itself to sequencing, information analysis, and biological research of the rice genome. Our Rice Information System (BGI-RIS) is targeted to be the most up-to-date integrated information resource for rice genomes as well as a workbench for comparative genomic analysis among cereal crops. Beijing Gene Finding), ...

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BGI Gene Finder Page

BGF: The Beijing Gene Finder (evaluation version 1.01). Please report bugs to: bgf@genomics.org.cn. Mirror site in Fudan University. BGF is written at the Beijing Genomics Institute (BGI). It is a hidden Markov model (HMM) and dynamic programming based ab initio. Gene prediction program. Input sequence length: [100, 500K]. It may accept multiple genomic sequences in FASTA format from a single file. Input your sequence and get your result:.

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