bioeng.washington.edu

Welcome to the NSR Physiome Project!

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. The Physiome Project Provides. Genome, proteome, morphome. Functional behavior of molecules and biological systems. Observations of intact cellular systems, organs, and intact organisms. Integration and consilience of knowledge. Schema of interactions (descriptive models). Quantitative descriptions of relationship (casual, statistical, mechanistic). Web operation of models.

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Welcome to the NSR Physiome Project! | bioeng.washington.edu Reviews

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This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. The Physiome Project Provides. Genome, proteome, morphome. Functional behavior of molecules and biological systems. Observations of intact cellular systems, organs, and intact organisms. Integration and consilience of knowledge. Schema of interactions (descriptive models). Quantitative descriptions of relationship (casual, statistical, mechanistic). Web operation of models.

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2 models

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4 links

5 databasing of information

6 platform independent

7 networked search engines

8 recent publications

9 downloads

10 tutorials list

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served by gloin,models,jsim,links,databasing of information,platform independent,networked search engines,recent publications,downloads,tutorials list,definitions,organization,development,participation,nsr model search,browse nsr models,course,websites

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Welcome to the NSR Physiome Project! | bioeng.washington.edu Reviews

https://bioeng.washington.edu

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. The Physiome Project Provides. Genome, proteome, morphome. Functional behavior of molecules and biological systems. Observations of intact cellular systems, organs, and intact organisms. Integration and consilience of knowledge. Schema of interactions (descriptive models). Quantitative descriptions of relationship (casual, statistical, mechanistic). Web operation of models.

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Welcome to the NSR Physiome Project!

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. The Physiome Project Provides. Genome, proteome, morphome. Functional behavior of molecules and biological systems. Observations of intact cellular systems, organs, and intact organisms. Integration and consilience of knowledge. Schema of interactions (descriptive models). Quantitative descriptions of relationship (casual, statistical, mechanistic). Web operation of models.

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INTERNAL PAGES

bioeng.washington.edu

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Physiome-Related Conferences

http://bioeng.washington.edu/News/conferences.html

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. HARMONY 2013: The Hackathon on Resources for Modeling in Biology,. May 20-23th, Farmington, CT, USA. V International Symposium on Modelling of Physiological Flows. Jun 11-14, Chia Laguna Domus de Maria, Cagliari, Sardinia Island, Italy. 2013 BMES Annual Meeting. Sept 25-28, Seattle, WA, Washington State Convention Center. PSB 2012 Pacific Symposium on Biocomputing. HARMONY i...

2

NSR Physiome Model Repository

http://bioeng.washington.edu/Models/index.html

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. NSR Physiome Model Repository. Indexed NSR Model list and search. JSim Model Standards and General Modeling Guidlines. This model repository also includes separate access to four other model databases (Biomodels, JWS, Kegg Pathway, and CellML) and contains JSim MML translations as well as links to the original sources. Models available for running through your web browser as...

3

Browse NSR Physiome models

http://bioeng.washington.edu/Models/modelDB/browse

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. Browse NSR Physiome models. Choose a term below and browse models associated with it:. Models used in tutorials on this site. Models based on publications. Models that use Partial Differential Equations. Models that calculate or use pH. Models used in NSR Physiome courses. This page was last modified 16Mar11, 11:03 am.].

4

Websites:

http://bioeng.washington.edu/Links

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. Physiome Sites with Models Displayed or Available for Download. Simulation Software and Modeling Environments. National University, Singapore. Institute for Advanced Biosciences E-cell Project. Keio University, Tokyo, Japan. Kitano Symbiotic Systems Project. Center for Advanced Medical Engineering and Informatics. Osaka University, Osaka, Japan. COR (Cellular Open Source).

5

NSR Tutorials

http://bioeng.washington.edu/Models/tutorial.html

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. Links to a model archive to bring up a JSim standard window and allow one to run a model, change parameters, edit the program, and save it on your own computer. One can develop one's own interface to replace the standard JSim window if so desired. Tutorials available at this time:. Modeling of transport and metabolism in whole organs according to Goresky.

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Welcome to the NSR Physiome Project!

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. The Physiome Project Provides. Genome, proteome, morphome. Functional behavior of molecules and biological systems. Observations of intact cellular systems, organs, and intact organisms. Integration and consilience of knowledge. Schema of interactions (descriptive models). Quantitative descriptions of relationship (casual, statistical, mechanistic). Web operation of models.

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