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The mothur blog

A discussion of quantitative isues in microbial ecology

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The mothur blog | blog.mothur.org Reviews
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A discussion of quantitative isues in microbial ecology
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8 happy mothur's day
9 cool examples
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The mothur blog | blog.mothur.org Reviews

https://blog.mothur.org

A discussion of quantitative isues in microbial ecology

INTERNAL PAGES

blog.mothur.org blog.mothur.org
1

Happy mothur's day!

http://blog.mothur.org/2015/05/11/Happy-mothurs-day

May 11, 2015 P.D. Schloss 2 min read. At least in the United States, Sunday was Mothers Day. The day we acknowledge the women that brought us into the world and the women that have helped care for us. Happy belated Mothers Day! We also love to mark Mothers Day as mothurs Day. When I can remember, I try to do something special to mark the date. Way back in the bad old days of Sanger sequencing, we published papers describing two software programs -. These programs did essentially what. The baby in iconic.

2

Why did I publish in mSphere?

http://blog.mothur.org/2015/11/06/Why-mSphere

Why did I publish in mSphere? Nov 6, 2015 PD Schloss 6 min read. On the morning of September 14th, I logged into mSpheres manuscript submission page. Ours was the first paper to be submitted and then eventually accepted at the new journal. Being published by the American Society for Microbiology. Joes paper was the last chapter from his thesis. The methods and approach parallel another paper from my lab published at. Trying to quantitatively predict. Nature Publishings open access journal (aka Natures PL...

3

Customize your reference alignment for your favorite region

http://blog.mothur.org/2016/07/07/Customization-for-your-region

Customize your reference alignment for your favorite region. Jul 7, 2016 PD Schloss 4 min read. One of the surprisingly unique aspects of the mothur-based SOP. That I encourage people to follow for their MiSeq and previously their 454. Data was to use an alignment-based approach to analyze their 16S rRNA gene sequence data. I laid this out in a commentary. Command. As Ive pointed out elsewhere ( here. This reference is the superior alignment and there are no excuses for using a different reference. T...

4

Initial reactions to the UMU & IMI

http://blog.mothur.org/2015/10/29/Initial-reactions

Initial reactions to the UMU and IMI. Oct 29, 2015 PD Schloss 7 min read. I must admit that I always feel a certain euphoria when I find people talking about microbiome research in the popular press or policy pieces. Im a microbiome homer. So you can imagine my feelings yesterday when. Published a piece indicating that each country would have its own UMI and these would be assembled under an International Microbiome Initiative (IMI). But is there a substantive reason to not do cartwheels? Lets focus on t...

5

MicroSeminar: A new way of doing conferences

http://blog.mothur.org/2014/10/14/MicroSeminar

MicroSeminar: A new way of doing conferences. Oct 14, 2014 PD. Schloss 2 min read. Why didnt I think of that? In the last few years Ive pretty much lost all my drive to go to conferences to give talks. So when I saw a Twitter post from Jennifer Biddle (UDel). This summer announcing the creation of the MicroSeminar. My talk will be this Friday (10/17/2014) at 11 AM eastern. You can watch it through their Google site. And later through their YouTube channel. When Jennifer took me up on my offer to provide ...

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Jul 12, 2016. Do you find that your computer can no longer handle the massive datasets that you are running? Does your institution not have a computer cluster? Welcome to the wonderful world of the Amazon Web Server. Jul 7, 2016. Customize your reference alignment for your favorite region. You threw caution to the wind and decided to sequence something other than the V4 region of the 16S rRNA gene. How do you pick the start and end coordinates when running pcr.seqs? Jan 12, 2016. Jan 4, 2016. Dec 3, 2015.

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