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Oxford Protein Informatics Group | or OPIG for friends

Oxford Protein Informatics Group. Or OPIG for friends. Hierachical Natural Move Monte Carlo using MOSAICS. After having recently published a large scale Molecular Dynamics simulations project of TCRpMHC [1,2] interaction I have extended my research to another technique of spatial sampling. At this week’s group meeting I presented the first results of my first MOSAICS [3] project. As a first conclusion of this project:. Which technique should be chosen for which project depends mainly on what the aims of ...

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Department of Statistics, Oxford University

Charlotte Deane

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Department of Statistics, Oxford University

Charlotte Deane

1 Sout●●●●●●s Road

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Department of Statistics, Oxford University

Charlotte Deane

1 Sout●●●●●●s Road

Ox●●rd , Oxfordshire, OX1 3PS

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Oxford Protein Informatics Group | or OPIG for friends | blopig.com Reviews

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Oxford Protein Informatics Group. Or OPIG for friends. Hierachical Natural Move Monte Carlo using MOSAICS. After having recently published a large scale Molecular Dynamics simulations project of TCRpMHC [1,2] interaction I have extended my research to another technique of spatial sampling. At this week’s group meeting I presented the first results of my first MOSAICS [3] project. As a first conclusion of this project:. Which technique should be chosen for which project depends mainly on what the aims of ...

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Oxford Protein Informatics Group | or OPIG for friends | blopig.com Reviews

https://blopig.com

Oxford Protein Informatics Group. Or OPIG for friends. Hierachical Natural Move Monte Carlo using MOSAICS. After having recently published a large scale Molecular Dynamics simulations project of TCRpMHC [1,2] interaction I have extended my research to another technique of spatial sampling. At this week’s group meeting I presented the first results of my first MOSAICS [3] project. As a first conclusion of this project:. Which technique should be chosen for which project depends mainly on what the aims of ...

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blopig.com

1

Malte Lucken | Oxford Protein Informatics Group

http://www.blopig.com/blog/author/malte

Oxford Protein Informatics Group. Or OPIG for friends. Author Archives: Malte Lucken. Improving the precision of local community detection. There are a lot of methods out there to find communities in networks. As a paper that compares community detection methods by Lancichinetti and Fortunato. So what do people generally do to find these communities? Well… very different things. To explain a few of the approaches, it helps to break them down into broad categories such as global and local methods. Here, A...

2

Building accurate models of membrane protein structures | Oxford Protein Informatics Group

http://www.blopig.com/blog/2015/02/building-accurate-models-of-membrane-protein-structures

Oxford Protein Informatics Group. Or OPIG for friends. Building accurate models of membrane protein structures. Is a tool for homology-based prediction of membrane protein structure (Figure below). As input memoir takes a target sequence and a template. First, using imembrane. The lipid bilayer boundaries are detected on the template. Using this information MP-T. With its membrane specific substitution matrices, aligns the target and template. Then, Medeller. ESSS 0: more coverage is met but not necessar...

3

OPIG ? | Oxford Protein Informatics Group

http://www.blopig.com/blog/sample-page

Oxford Protein Informatics Group. Or OPIG for friends. Acronym, also used as a noun. Oxford Protein Informatics Group; research group in the statistics department at the University of Oxford focusing on aspects of protein modelling, homology modelling, membrane proteins, sequence alignment, anti-bodies, and drug-discovery. Headed by Prof. Charlotte M. Deane. The background distribution of the 16-member team as of 03/02/2013. Oh, did I mention we like pies? And we also like computer code; so here is the R.

4

Inside Memoir: MP-T aligns membrane proteins | Oxford Protein Informatics Group

http://www.blopig.com/blog/2013/05/inside-memoir-mp-t-aligns-membrane-proteins

Oxford Protein Informatics Group. Or OPIG for friends. Inside Memoir: MP-T aligns membrane proteins. Has received a lot of air-time on this blog, we haven’t gone into a great deal of detail about how it models membrane proteins. Memoir is a pipeline involving a series of programs iMembrane - MP-T - Medeller - Fread, and in this post I’ll explain the MP-T step (I’ll briefly touch on Medeller too). To take advantage of this pattern. On then to modelling. The conventional approach to aligning a pair of ...

5

alignment | Oxford Protein Informatics Group

http://www.blopig.com/blog/tag/alignment

Oxford Protein Informatics Group. Or OPIG for friends. A topology-based distance measure for network data. In last week’s group meeting, I introduced our network comparison method (Netdis) and presented some new results that enable the method to be applied to larger networks. Fig1: Effect of sub-sampling egos on the resulting grouping of networks generated by Netdis. Higher Rand index values indicate better fit to non-sampling results. This entry was posted in Group Meetings. March 5, 2015. In essence th...

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wonka.sgc.ox.ac.uk

WONKA: Home

http://wonka.sgc.ox.ac.uk/WONKA

Data analysis and interrogation tool. Welcome to WONKA. Please log in. Or click here to login! Click here to register. Made by Anthony Bradley. Contact him at anthony.bradley@worc.ox.ac.uk. Code licensed under the Apache License v2.0. Icons from Font Awesome. Web fonts from Google. Favicon by Gerald Hiller.

wcmb-oxford.blogspot.com

WCMBlog: November 2013

http://wcmb-oxford.blogspot.com/2013_11_01_archive.html

Random walks in a biological world. Saturday, 30 November 2013. Can adaptive mesh refinement regimes be improved with a Voronoi partition? In this post Robert Ross. A first-year D.Phil. student at the WCMB, discusses a result from a 10-week research project on adaptive mesh refinement regimes that he undertook this summer at the Systems Biology Doctoral Training Centre. Wednesday, 27 November 2013. Tumour-microenvironment interactions in disease progression and drug resistance. In this post Noemi Picco.

wcmb-oxford.blogspot.com

WCMBlog: Discrete and continuous models for tissue growth and shrinkage

http://wcmb-oxford.blogspot.com/2014/03/discrete-and-continuous-models-for_5190.html

Random walks in a biological world. Monday, 31 March 2014. Discrete and continuous models for tissue growth and shrinkage. Summarises his recent paper “. Discrete and continuous models for tissue growth and shrinkage. 8221;, on modelling tissue growth and shrinkage using mathematical models that explicitly incorporate randomness in the tissue deformation process. I recently had a paper published in the Journal of Theoretical Biology. Δ Tracer particles move with the elements and a new element (hatched) i...

wcmb-oxford.blogspot.com

WCMBlog: December 2013

http://wcmb-oxford.blogspot.com/2013_12_01_archive.html

Random walks in a biological world. Sunday, 29 December 2013. Turing's theory of developmental pattern formation (Video lecture). In this talk given at the University of Edinburgh. In 2012, our director Prof. Philip Maini. Gives an overview of the principles of pattern formation in mathematical biology. Sunday, 22 December 2013. Perspective on mathematical biology - Going back to go forward. This post by the Director of the WCMB, Prof. Philip Maini. Wednesday, 18 December 2013. Sunday, 15 December 2013.

wcmb-oxford.blogspot.com

WCMBlog: August 2015

http://wcmb-oxford.blogspot.com/2015_08_01_archive.html

Random walks in a biological world. Tuesday, 11 August 2015. Video: Squirrels, Cancers, and other Invaders. Recently, at the Isaac Newton Institute's program on Coupling Geometric PDEs with Physics for Cell Morphology, Motility and Pattern Formation. Our very own Professor Philip Maini, FRS, gave another one of his classic talks, featuring (almost) everything from squirrels to cancer, including the admission of crying and how to cope with it ( spoiler. The talk was cleverly titled: ". Watch the video here.

wcmb-oxford.blogspot.com

WCMBlog: Ebola Crisis Hackathon

http://wcmb-oxford.blogspot.com/2014/11/ebola-crisis-hackathon.html

Random walks in a biological world. Monday, 24 November 2014. The Ebola Virus has killed almost 6000 people in West Africa since Dec 2013. It was with these obstacles in mind that the Said Business School's Oxford Launchpad. While researching the problems around the diagnosis and treatment of Ebola, before the hackathon, I read about the potential for Ebola to be diagnosed using mobile apps. Mobile phones are a primary communication method in West Africa. On the Hackathon in last week's New Scientist.

wcmb-oxford.blogspot.com

WCMBlog: Understanding the host-virus interaction in chronic HTLV-I infection with the help of mathematical modelling

http://wcmb-oxford.blogspot.com/2014/03/understanding-host-virus-interaction-in.html

Random walks in a biological world. Monday, 24 March 2014. Understanding the host-virus interaction in chronic HTLV-I infection with the help of mathematical modelling. In this post Aaron Lim. A DPhil student at the WCMB and the EEID, discusses his work on within-host mathematical modelling of host-virus interactions. In the Wolfson Centre for Mathematical Biology (WCMB). And Prof Sunetra Gupta. In the Evolutionary Ecology of Infectious Disease (EEID). Human T-lymphotropic virus type I (HTLV-I) is a pers...

wcmb-oxford.blogspot.com

WCMBlog: On tweetcasting

http://wcmb-oxford.blogspot.com/2014/06/on-tweetcasting.html

Random walks in a biological world. Wednesday, 25 June 2014. After a travel- and conference-induced. Silence over the past months, we're back from the ECMTB in Gothenburg with some fresh thoughts for new posts. To start, Alex Fletcher, Linus Schumacher and Jacob Scott discuss a newly fashionable conference activity: tweetcasting. An increasing number of academics are using twitter professionally. For a recent example of tweetcasting from the ECMTB 2014. By Dr Jacob Scott. A packed audience @ECMTB2014.

sultanofsnow.wordpress.com

2013 year in blogging | Sultan of Snow's Blog

https://sultanofsnow.wordpress.com/2013/annual-report

Sultan of Snow's Blog. Happy New Year from WordPress.com! Each rocket represents a post published on this blog in 2013. And because we like to share, we made the fireworks available as a jQuery plugin on GitHub. Some browsers are better suited for this kind of animation. In our tests, Safari and Chrome worked best. Your overall score is not known. We made beautiful, animated fireworks to celebrate your blogging! A New York City subway train holds 1,200 people. This blog was viewed about 4,400. Into the L...

wcmb-oxford.blogspot.com

WCMBlog: April 2014

http://wcmb-oxford.blogspot.com/2014_04_01_archive.html

Random walks in a biological world. Sunday, 6 April 2014. James D Murray, Reflections of a life in Academia, in conversation with Phillip Maini. Founder of the WCMB, James Murray. Visited Oxford last month to give the inaugural Hooke. Lecture, "Why there are no three-headed monsters, resolving some problems with brain tumours, divorce prediction and how to save marriages". While he was here, he was interviewed by his former student and our current director Prof. Philip Maini. Subscribe to: Posts (Atom).

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Oxford Protein Informatics Group | or OPIG for friends

Oxford Protein Informatics Group. Or OPIG for friends. Hierachical Natural Move Monte Carlo using MOSAICS. After having recently published a large scale Molecular Dynamics simulations project of TCRpMHC [1,2] interaction I have extended my research to another technique of spatial sampling. At this week’s group meeting I presented the first results of my first MOSAICS [3] project. As a first conclusion of this project:. Which technique should be chosen for which project depends mainly on what the aims of ...

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