pughlab.autoboxdev.com
Patient Tissue | Pugh Lab
http://pughlab.autoboxdev.com/patient-tissue
Http:/ pughlab.autoboxdev.com/tools-techniques/tissue. Trevor Pugh, PhD, FACMG. MaRS Centre, 101 College Street. Princess Margaret Cancer Research Tower, Room 9-305. Toronto, Ontario, Canada M5G 1L7.
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Pugh Lab
http://autoboxdev.com/pughlab.autoboxdev.com
Nulla porta lacinia fermentum. Suspendisse eget massa ligula. Donec lobortis nibh non diam blandit dictum. Integer dignissim purus cursus arcu blandit auctor. Morbi eget ultrices dui. Duis suscipit semper viverra. Class aptent taciti sociosqu ad litora torquent per conubia nostra, per incepts himenaeos. Nulla feugiat quam et ligula lacinia. DNA Sequencing Analysis Pipeline. VisCap is tool for inferring germline copy number variants from targeted sequencing data. RNA Sequencing Analysis Pipeline.
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Tool 2 | Pugh Lab
http://pughlab.autoboxdev.com/tool-2
Sed sed fermentum ante, nec suscipit odio. Nulla nec fringilla lorem, ut dictum ligula. Cras sollicitudin scelerisque justo at luctus. Nunc lacus odio, placerat placerat nisi in, placerat rhoncus erat. Nunc condimentum tempor dolor. Pellentesque quis lacus porta, hendrerit est in, gravida tellus. Ut dignissim ligula eget nisl condimentum feugiat. Donec euismod tortor in nisi bibendum, sit amet pharetra magna faucibus. Http:/ pughlab.autoboxdev.com/tools-techniques/tool-2. Trevor Pugh, PhD, FACMG.
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RNA Sequencing Analysis Pipeline | Pugh Lab
http://pughlab.autoboxdev.com/tools-techniques/dry-lab/rna-sequencing-analysis-pipeline
RNA Sequencing Analysis Pipeline. DNA Sequencing Analysis Pipeline. Trevor Pugh, PhD, FACMG. MaRS Centre, 101 College Street. Princess Margaret Cancer Research Tower, Room 9-305. Toronto, Ontario, Canada M5G 1L7.
pughlab.autoboxdev.com
Nulla feugiat quam et ligula lacinia. | Pugh Lab
http://pughlab.autoboxdev.com/nulla-feugiat-quam-et-ligula-lacinia
Nulla feugiat quam et ligula lacinia. Donec gravida nunc luctus odio vulputate rhoncus. Mauris vel condimentum odio, sed consectetur justo. Sed et risus velit. In at libero ut ipsum volutpat mattis quis non nulla. Pellentesque semper urna libero, nec vulputate nisl feugiat sed. Http:/ pughlab.autoboxdev.com/tools-techniques/tool-1. Trevor Pugh, PhD, FACMG. MaRS Centre, 101 College Street. Princess Margaret Cancer Research Tower, Room 9-305. Toronto, Ontario, Canada M5G 1L7.
pughlab.autoboxdev.com
Jobs | Pugh Lab
http://pughlab.autoboxdev.com/jobs
We are seeking computational biologists and software engineers with expertise in developing and implementing software workflows to analyse data from next-generation DNA sequencers and other, smaller-scale genetic assays. We are seeking postdoctoral fellows with exceptional problem-solving and analytic ability to lead collaborative, clinically-oriented cancer genome analysis projects towards the goal of linking germline and somatic alterations to clinical course. Trevor Pugh, PhD, FACMG.
pughlab.autoboxdev.com
Bioinformatics | Pugh Lab
http://pughlab.autoboxdev.com/bioinformatics
Trevor Pugh, PhD, FACMG. MaRS Centre, 101 College Street. Princess Margaret Cancer Research Tower, Room 9-305. Toronto, Ontario, Canada M5G 1L7.
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VisCap | Pugh Lab
http://pughlab.autoboxdev.com/tools-techniques/dry-lab/viscap
VisCap is a copy number detection and visualization tool written in R ( www.r-project.org. For analysis of next-generation sequencing data derived from hybrid-capture experiments. It requires installation of the R libraries "gplots", "zoo", and cluster . We reported validation of this algorithm for detection of germline variation in Genetics in Medicine:. VisCap: inference and visualization of germ-line copy-number variants from targeted clinical sequencing data. Trevor Pugh, PhD, FACMG.
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Tools & Techniques | Pugh Lab
http://pughlab.autoboxdev.com/tools-techniques
Included on this page is information relating to both the Wet Lab Protocols and the Dry Lab Methods used within the Pugh Lab. Trevor Pugh, PhD, FACMG. MaRS Centre, 101 College Street. Princess Margaret Cancer Research Tower, Room 9-305. Toronto, Ontario, Canada M5G 1L7.
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Publications | Pugh Lab
http://pughlab.autoboxdev.com/publications
Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations. Nature. 2012 Aug 2;488(7409):106-10. PMID 22820256. The genetic landscape of high-risk neuroblastoma. Nature Genetics. 2013 Mar;45(3):279-84. PMID 23334666. A systematic approach to assessing the clinical significance of genetic variants. Clinical Genetics. 2013 Nov;84(5):453-63. PMID 24033266. The landscape of genetic variation in dilated cardiomyopathy as surveyed by clinical DNA sequencing. Trevor Pugh, PhD, FACMG.