cbi.cmu.edu

murphylab.cbd.cmu.edu

Murphy Lab | Presentations

http://murphylab.cbd.cmu.edu/presentations

Center for Bioimage Informatics. Murphy Lab - Presentations. Slides from 2014 SCS IC. Slides from Keynote Address. Given at Center for Talented Youth event at the Lane Center for Computational Biology at Carnegie Mellon University, November 9, 2013. Slides from "Automated construction of generative models from time series cell images: Tools for more complete analysis of perturbagen effects". Given at High Content Analysis, January 11, 2012, San Francisco, California. From talk at the COMBINE 2011. Lectur...

murphylab.cbd.cmu.edu

Murphy Lab | Software

http://murphylab.cbd.cmu.edu/software

Center for Bioimage Informatics. Murphy Lab - Software. OMEROsearcher LocalClient v1.3. July 11, 2013]. September 30, 2013]. February 3, 2013]. OMEROsearcher Server v1.1.2. For OMERO version 4.3.3) [May 16, 2012]. PSLID and SLIC Software Distributions. Software from published papers (Reproducible Research Archives). Last Updated: 21 Oct 2013.

murphylab.cbd.cmu.edu

Murphy Lab | Flow Cytometry

http://murphylab.cbd.cmu.edu/murphylab_flow.html

Center for Bioimage Informatics. Murphy Lab - Flow Cytometry. Includes an index to free analysis software). International Society for Analytical Cytology ( ISAC. Measuring pH of endocytic compartments. Has anyone used flow cytometry or sorting with individual vesicular organelles? Anyone used flow cytometry or sorting with individual vesicular organelles? Yes an annotated bibliography is included below. Proc Natl. Acad. Sci. U.S.A. Detection of endocytic vesicles using a fluorogenic substrate (Fig. 3).

murphylab.cbd.cmu.edu

Murphy Lab | Data

http://murphylab.cbd.cmu.edu/data

Center for Bioimage Informatics. Murphy Lab - Data. 2D 3T3 RT Set3. 2D 3T3 RT Set4. Raw and processed image collections. 2D 3T3 RT Set1. 2D 3T3 RT Set2. 2D 3T3 and U20S segmented nuclei. UCSF yeast GFP images. ISMB 2007 Yeast Image Classification. Cytometry 2007 Generative Models. Images of T cells expressing different EGFP-tagged proteins collected by the Wülfing group as part of the following study. 2D images of 3T3 and U20S cells hand-segmented to show nuclear boundaries. S-C Chen, T. Zhao, G....The 2...

murphylab.cbd.cmu.edu

Murphy Lab | Services | SLIF

http://murphylab.cbd.cmu.edu/services/SLIF

Center for Bioimage Informatics. Center for Bioimage Informatics. And Departments of Biological Sciences. Pittsburgh, Pennsylvania, U.S.A. SLIF finds fluorescence microscope images in on-line journal articles, and indexes them according to cell line, proteins visualized, and resolution. Images can be accessed via the SLIF Web database. An on-line summary of the architecture of SLIF. Can be found here. On SLIF from the 2008 ISMB conference can be found on the Presentations page. Proceedings of the 2nd IEE...

murphylab.cbd.cmu.edu

Murphy Lab | Services

http://murphylab.cbd.cmu.edu/services

Center for Bioimage Informatics. Murphy Lab - Services. Fluorescence Microscopy Annotation Schema. Protein Subcellular Location Image Database. Subcellular Location Image Finder. A unified interface to up-to-date subcellular location information from protein databases. Last Updated: 05 Jun 2013.

murphylab.cbd.cmu.edu

Murphy Lab | Publications

http://murphylab.cbd.cmu.edu/murphylab_pubs.html

Center for Bioimage Informatics. Robert F. Murphy's Research Publications. View Annotated List of Publications Grouped by Topic. View Citations page at Google Scholar. Applications of Fluorescence in the Biomedical Sciences (1986) D. L. Taylor, A. S. Waggoner, R. F. Murphy, F. Lanni, R. Birge (eds.), Alan R. Liss, Inc., New York. Endosomes and Lysosomes: A Dynamic Relationship (1993) B. Storrie and R. F. Murphy (eds.), JAI Press. R F Murphy, W. R. Pearson and J. Bonner (1979). Computer Pr...R F Murphy, R...

murphylab.cbd.cmu.edu

Murphy Lab | Information

http://murphylab.cbd.cmu.edu/murphylab_info.html

Center for Bioimage Informatics. Murphy Lab - Information. The People of Murphy Lab. Dr Robert F. Murphy. Short CV (as html). Long CV (as PDF). Kelvin Liu, Joint CMU-Pitt Ph.D. program in Computational Biology. Xiongtao Ruan, Joint CMU-Pitt Ph.D. program in Computational Biology. Timothy Majarian, M.S. Program in Computational Biology. Jingyi Wang, M.S. Program in Biomedical Engineering. Sun Uk Kim, M.S. Program in Biomedical Engineering. Pittsburgh, PA 15213. 1412268.3480 (Dr. M's Office). Armaghan Naik...

murphylab.cbd.cmu.edu

Murphy Lab | Imaging Services | PSLID

http://murphylab.cbd.cmu.edu/services/PSLID

Center for Bioimage Informatics. Murphy Lab - Imaging Services - PSLID. PSLID - Protein Subcellular Location Image Database. PSLID provides open-access, structured, well-annotated databases of fluorescence microscope images depicting subcellular location proteins. Databases containing various collections of images are available at http:/ pslid.org. 3D images of 90 NIH 3T3 clones created by CD-tagging. 3D images of wildtype and 11 mutants of GFP-tagged UCE in HeLa cells. Last Updated: 17 Jan 2013.

murphylab.web.cmu.edu

Murphy Lab | Software

http://murphylab.web.cmu.edu/software

Center for Bioimage Informatics. Murphy Lab - Software. OMEROsearcher LocalClient v1.3. July 11, 2013]. September 30, 2013]. February 3, 2013]. OMEROsearcher Server v1.1.2. For OMERO version 4.3.3) [May 16, 2012]. PSLID and SLIC Software Distributions. Software from published papers (Reproducible Research Archives). Last Updated: 21 Oct 2013.