compbio.med.harvard.edu

Computational Genomics (PI: Peter J Park)

We are a bioinformatics research group and are part of the Center for Biomedical Informatics. At Harvard Medical School. Children's Hospital Informatics Program. Harvard-MIT Division of Health, Science, and Technology. And Division of Genetics at Brigham and Women's Hospital. More information on the principal investigator is here. Sep 1, 2014: Not a bad week for the Park lab: we had papers in. All in the same week! Oct 31, 2013: This time, congratulations to Francesco, Andrew! Davis et al. (pp. 3...Recen...

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Computational Genomics (PI: Peter J Park) | compbio.med.harvard.edu Reviews

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We are a bioinformatics research group and are part of the Center for Biomedical Informatics. At Harvard Medical School. Children's Hospital Informatics Program. Harvard-MIT Division of Health, Science, and Technology. And Division of Genetics at Brigham and Women's Hospital. More information on the principal investigator is here. Sep 1, 2014: Not a bad week for the Park lab: we had papers in. All in the same week! Oct 31, 2013: This time, congratulations to Francesco, Andrew! Davis et al. (pp. 3...Recen...

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Computational Genomics (PI: Peter J Park) | compbio.med.harvard.edu Reviews

https://compbio.med.harvard.edu

We are a bioinformatics research group and are part of the Center for Biomedical Informatics. At Harvard Medical School. Children's Hospital Informatics Program. Harvard-MIT Division of Health, Science, and Technology. And Division of Genetics at Brigham and Women's Hospital. More information on the principal investigator is here. Sep 1, 2014: Not a bad week for the Park lab: we had papers in. All in the same week! Oct 31, 2013: This time, congratulations to Francesco, Andrew! Davis et al. (pp. 3...Recen...

INTERNAL PAGES

compbio.med.harvard.edu

1

Publications

http://compbio.med.harvard.edu/publication.html

Equal contribution; * co-corresponding authors). HiHMM: Bayesian non-parametric joint inference of chromatin state maps. Sohn KA*, Ho JW*, Djordjevic D, Jeong HH, Park PJ* , Kim JH* . Identification of rare germline copy number variations over-represented in five human cancer types. Park RW, Kim TM, Kasif S, Park PJ. Genome-Wide Analysis of Wilms' Tumor 1-Controlled Gene Expression in Podocytes Reveals Key Regulatory Mechanisms. J Am Soc Nephrol. The Cancer Genome Atlas Research Network. A genome-wide vi...

2

People

http://compbio.med.harvard.edu/principal_investigator.html

Dr Park is a computational biologist at Harvard Medical School. Specializing in epigenomics and cancer genomics. He was originally trained in applied mathematics at Harvard and Caltech, writing his doctoral thesis on numerical analysis of partial differential equations. He became interested in molecular biology and genomics while doing a postdoctoral fellowship in the Biostatistics Department. At the Harvard School of Public Health. He moved to Children's Hospital Boston. An associate editor of. He lives...

3

People

http://compbio.med.harvard.edu/people.html

Lab lunch, Sep 2014. Missing: Dan Day, Nils Gehlenborg. Burak Alver, Ph.D. - Postdoctoral Fellow. Burak finished his Ph.D. in experimental heavy ion physics at MIT before joining the lab. He is interested in epigenetics. Dan Day, B.S. - Graduate student. Francesco Ferrari, Ph.D. - Postdoctoral Fellow. Francesco did his graduate work in molecular biology/bioinformatics at the University of Modena and Reggio Emilia in Italy and was a postdoc at the University of Padova before joining the lab. Scott receive...

4

People

http://compbio.med.harvard.edu/old_news.html

July, 2012: Congratulations to Michael for his new faculty position in the Department of Molecular Biology at Massachusetts General Hospital. Well done! His lab page is here. June 2012: We welcome two visitors to the lab: Guidantonio Malagoli Tagliazucchi, a graduate student from Modena, Italy (May-Nov), and Dr. Marc Streit from Johannes Kepler University in Linz, Austria (Aug-Oct). June 2012: Congratulations to Alice and Michael for their forthcoming papers in Science. Congrats to Peter Khachenko and th...

5

Supplementary Material

http://compbio.med.harvard.edu/supplement.html

Supplementary Material for Published Papers. Ho et al,. External site at encodeproject.org, designed by Nils Gehlenborg). Comparative analysis of metazoan chromatin organization. Apostolou et al,. Genome-wide Chromatin Interactions of the Nanog Locus in Pluripotency, Differentiation, and Reprogramming. Xi et al,. Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion. Larschan et al,. Kim et al,. Tolstorukov et al,. Nature Structural and Molecular Biology.

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vcg.seas.harvard.edu

Genome Web Article about StratomeX, our Disease Subtype Analysis Tool | Visual Computing Group

http://vcg.seas.harvard.edu/news/genome-web-article-about-our-disease-subtype-analysis-tool

Skip to main content. Genome Web Article about StratomeX, our Disease Subtype Analysis Tool. September 8, 2014. Genome Web has published an article about StratomeX. Our disease subtype analysis tool which was recently published in Nature Methods. The tool is part of the Caleydo framework. And was developed in collaboration with researchers from the Harvard Medical School. Harvard Gazette $28M challenge to figure out why brains are so good at learning. Exhibition at ISCP in New York. Filter News by Month.

lekschas.de

Fritz Lekschas

http://www.lekschas.de/about

I am a prospective. Student in computer science at Harvard John A. Paulson School of Engineering and Applied Sciences. I received my Bachelor's and Master's in bioinformatics from the Free University of Berlin. And previously joined Peter J. Park's. Labs in the Department of Biomedical Informatics. At Harvard Medical School. As a visiting postgrad research fellow. From 2010 to 2015, I was a research assistant. At Charité - University Hospital Berlin. I have been the main web developer. Is a web applicati...

vcg.seas.harvard.edu

Pattern Recognition New visualization software uncovers cancer subtypes | Visual Computing Group

http://vcg.seas.harvard.edu/news/pattern-recognition-new-visualization-software-uncovers-cancer-subtypes

Skip to main content. Pattern Recognition New visualization software uncovers cancer subtypes. October 2, 2014. October 2, 2014. A new tool helps researchers uncover patterns among cancer patient sets. Image: Caleydo team. Trouble is, it’s impossible for humans to browse that much data, let alone make any sense of it. Seeing that the toolbox isn’t yet complete, computational specialists in the lab of Peter Park. At Harvard University’s School of Engineering and Applied Sciences (SEAS) have teamed up with...

safegenes.org

Laboratories | Children's Hospital Informatics Program

http://www.safegenes.org/laboratories

Children's Hospital Informatics Program. The Laboratories in the Children's Hospital Informatics Program span a wide range of research interests in bioinformatics and clinical informatics. Our goal is to make significant contributions to biomedical research and patient care by understanding and utilizing various types of genomic and proteomic data and by developing innovative hardware and software technologies. The Predictive Medicine Group works to realize the vision of predictive medicine and public he...

pklab.med.harvard.edu

Kharchenko Lab

http://pklab.med.harvard.edu/software.html

Making sense of genomic data! Single Cell Differential Expression. Pacakge provides routines for analysis of single-cell RNA-seq data. It is based on the probabilistic mixture error model, which is used to implement differential expression, subpopulation analysis and other tasks on the data. Developed with Park Lab. During PI's postdoctoral fellowship and shortly after:. Cancerous tumors), however it is also capable of detecting instances of repeat insertions polymorphic among individuals. The spp R pack...

pklab.med.harvard.edu

Kharchenko Lab

http://pklab.med.harvard.edu/index.html

Making sense of genomic data! Aug 1st, 2015. Integrative analysis of genome-wide epigenetic, transcriptional and proteomic data, aiming to identify specific factors and molecular mechanisms underlying misregulation of the epigenetic states in several types of human cancer. Development of novel statistical approaches to analysis of single-cell genomic data, mathematical modeling of cellular processes, as well as applications of such techniques to studies healthy and diseased tissues. Which can capture mul...

caleydo.org

Show me the Invisible: Visualizing Hidden Content

http://www.caleydo.org/publications/2014_chi_hidden-content

Show me the Invisible: Visualizing Hidden Content. Geymayer, Markus Steinberger, Alexander Lex. Show me the Invisible: Visualizing Hidden Content. Proceedings of the SIGCHI Conference on Human Factors in Computing Systems (CHI ’14), pp. 3705-3714, doi:10.1145/2556288.2557032. ACM CHI 2014 Honorable Mention Award. Visualizing Hidden Content Demonstration Video. Caleydo is a joint project of. Creative Commons Attribution license (CC BY).

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compbio.iupui.edu

home - Center for Computational Biology and Bioinformatics

Indiana University–Purdue University Indianapolis. Indiana University–Purdue University Indianapolis. School of Medicine ▴. Computational Biology and Bioinformatics. Next Gen Sequencing Course. Click the linked date of the event for further details. Center for Computational Biology and Bioinformatics. Health Information and Translational Sciences (HITS). 410 W 10th St., Suite 5000. Indianapolis, IN 46202. BIOINFORMATICS SERVICE PROJECT PROPOSAL REQUEST FORM. The Trustees of Indiana University.

compbio.ku.edu

Homepage | Center for Computational Biology

Skip to main content. The University of Kansas. Center for Computational Biology. College of Liberal Arts and Sciences. Faculty Position in Computational Biology. Faculty Position in Computational Biology. Welcome to The Center for Computational Biology. Formerly The Center for Bioinformatics, The Center for Computational Biology (Computational Biology Program) is an academic unit with tenure-track/tenured faculty appointments in the Program and postdoctoral and graduate training. January 21, 2017. One o...

compbio.lehigh.edu

Wonpil Im Research Group

Research in our group is focused on the applications of theoretical/computational methods to chemical and physical problems in biology and material science. Specific research interests are: (see the details. Protein/peptide interactions with/in biological membranes. Transmembrane-induced signaling and regulation. NMR structure calculation and refinement. Modeling and simulation of glycoconjugates ( GlycanStructure.ORG. Bacterial outer membranes and interactions with proteins. As well as ST-analyzer.

compbio.massey.ac.nz

CompBio @ Massey University

These are webpages dedicated to computational biology and related deciplines at the Institute of Natural and Mathematical Sciences (INMS). In Albany, Auckland. The webpages are used to host information and news regarding people, courses, workshops, and conferences as well as research related tools and databases. Building 14, INMS. Station Crescent, Gate 4. Auckland, New Zealand. 64 9 414 0800 (ext: 43538). Gate 4, Building 11, INMS. Auckland 0630, New Zealand.

$compbio.math.pmf.unizg.hr$ compbio.math.pmf.unizg.hr

compbio

At Department of Mathematics, University of Zagreb.

compbio.med.harvard.edu

Computational Genomics (PI: Peter J Park)

We are a bioinformatics research group and are part of the Center for Biomedical Informatics. At Harvard Medical School. Children's Hospital Informatics Program. Harvard-MIT Division of Health, Science, and Technology. And Division of Genetics at Brigham and Women's Hospital. More information on the principal investigator is here. Sep 1, 2014: Not a bad week for the Park lab: we had papers in. All in the same week! Oct 31, 2013: This time, congratulations to Francesco, Andrew! Davis et al. (pp. 3...Recen...

compbio.med.wayne.edu

Krawetz Lab

Charlotte B. Failing Professor of Fetal Therapy and Diagnosis. Associate Director C.S. Mott Center for Human Growth and Development,. Wayne State University School of Medicine. Department of Obstetrics and Gynecology. Center for Molecular Medicine and Genetics. Postdoctoral Positions Available - click here. C, Goodrich, R., Swanson, S., Hauser, R., Diamond, M. Click for Full Text. Johnson, G.D., Mackie. SA (2015 Jun 13. pii. Gkv591. [ Epub. Click for Full Text. Analysis methods to examine gene expression...

compbio.mit.edu

Compbio.mit.edu - MIT Computational Biology Group - Kellis Lab at MIT and Broad Institute

We work in a highly interdisciplinary environment at the interface of computer science and biology. Members of the group come from a primarily computational background and share a strong passion for understanding biological systems. We are engaged in several collaborative research partnerships with biological and experimental collaborators, at the Broad Institute, the ENCODE, modENCODE, GTEx, and Epigenomics Roadmap consortia, the Harvard Medical School, and other universities. Read more on: Chromatin.

compbio.ornl.gov

Computational Biology at Oak Ridge National Laboratory

Welcome to Our Web Site. We are the Comparative Genomics and the Computational Biology and Bioinformatics Groups of the Biosciences Division of Oak Ridge National Laboratory. We conduct genetics research and system development in genomic sequencing, computational genome analysis, and computational protein structure analysis. Our collaborators include ORNL's Computer Science and Mathematics Division, the Joint Institute for Biological Sciences, and ORNL's Genome Science and Technology Graduate Program.

compbio.ox.ac.uk

CBRG, Oxford University

You are here: CBRG home. Search CBRG web site. Welcome to the CBRG. The Computational Biology Research Group (CBRG) provides computing support. For bioinformatics analysis at the University of Oxford. We have expertise in many aspects of bioinformatics (sequence analysis, microarrays, proteomics and integration). We especially encourage collaborations that require writing custom software, bioinformatics tools and databases. An account with the CBRG has many benefits. Bioinformatics analysis tools online:.

compbio.snu.ac.kr

Lab of Computational Biology and Biomolecular Engineering

Lab of Computational Biology and Biomolecular Engineering. 502-203 Department of Chemistry, Seoul National University, Seoul 08826, Republic of Korea.