Systems Biology at the University of Virginia where computing dry lab resources help advance medical research by characterizing genes and proteins.
http://compsysbio.achs.virginia.edu/
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University of Virginia Computational Systems Biology | compsysbio.achs.virginia.edu Reviews
https://compsysbio.achs.virginia.edu
Systems Biology at the University of Virginia where computing dry lab resources help advance medical research by characterizing genes and proteins.
compsysbio.achs.virginia.edu
TOBFAC: TOBacco transcription FACtors
http://compsysbio.achs.virginia.edu/tobfac
TOBFAC: The database of tobacco transcription factors. Download TOBFAC sequences (fasta). Download TOBFAC sequences (long header, fasta). GenBank protein BLAST results. See all search queries. All search queries (fasta). TOBFAC sequences with GenBank acc (.csv tab separated). Links to other TF databases. 1) 1,159,022 gene-space sequence reads (GSRs) obtained by methylation filtering from the Tobacco Genome Initiative (TGI). 3) The complete TOBFAC database of tobacco transcription factors. We are also imp...
COPFAC: COwPea transcription FACtors
http://compsysbio.achs.virginia.edu/copfac
COPFAC: COwPea transcription FACtors. Download all COPFAC sequences in fasta format with annotations where possible. Authors of this site:. Marta T. Bokowiec. Thomas (Tom) W Laudeman. Jennifer F. Brannock. Michael P. Timko.
Fibroblast gene pattern change data
http://compsysbio.achs.virginia.edu/hs68_fibroblast
At the University of Virginia. Genes with fold change. Genes downregulated fibroblasts.xls. Genes whose expression increased (fold change ≥ 2) in both the fibroblasts co-cultured with BLM or MV3 and decreased (fold change. Genes upregulated fibroblasts.xls. Jay W Fox jwf8x@virginia.edu. Ling Li ll9j@virginia.edu. University of Virginia School of Medicine.
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University of Virginia Computational Systems Biology
At the University of Virginia. HS68 Fibroblast Crosstalk with Melanoma. Public data from the study of crosstalk between HS68 fibroblast and melanoma. Cowpea genespace sequencing and analysis project. Data mining and tools to use the cowpea genespace reads. Includes BLAST annotations, SSRs, and downloads. UVa OMSSA Web Introduction. UVa's free, improved web interface to OMSSA. TOBFAC: Tobacco Transcription Factors. Open source XLST scripts for use with OMSSA. OMSSA and pepXML XSLT scripts tar format.
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