docs.openworm.org

OpenWorm

Muscle / Neuron / Channel. OpenWorm is an open source project and open science community dedicated to creating the world's first whole organism in a computer, a. Nematode, via bottom-up "systems biology" computational modeling. It is an association of highly motivated scientists, engineers, coders, and curious citizens from around the world who believe in open science and open access. OpenWorm is actively working to achieve its goal - creating the world's first virtual organism in a computer - by:. Our m...

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Muscle / Neuron / Channel. OpenWorm is an open source project and open science community dedicated to creating the world's first whole organism in a computer, a. Nematode, via bottom-up systems biology computational modeling. It is an association of highly motivated scientists, engineers, coders, and curious citizens from around the world who believe in open science and open access. OpenWorm is actively working to achieve its goal - creating the world's first virtual organism in a computer - by:. Our m...

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OpenWorm | docs.openworm.org Reviews

https://docs.openworm.org

Muscle / Neuron / Channel. OpenWorm is an open source project and open science community dedicated to creating the world's first whole organism in a computer, a. Nematode, via bottom-up "systems biology" computational modeling. It is an association of highly motivated scientists, engineers, coders, and curious citizens from around the world who believe in open science and open access. OpenWorm is actively working to achieve its goal - creating the world's first virtual organism in a computer - by:. Our m...

INTERNAL PAGES

docs.openworm.org

1

Background - OpenWorm

http://docs.openworm.org/en/latest/background

Muscle / Neuron / Channel. Established in January 2011, OpenWorm has since that time built a community of highly-motivated and highly-skilled individuals and coordinated their work. This community has produced scientific publications making use of scientific research published through open access, helping to show the validity of the open science approach we have taken. For a more extensive history of the project. More information is available on the past history of OpenWorm releases. Complex neuronal act...

2

Resources - OpenWorm

http://docs.openworm.org/en/latest/Resources/resources

Muscle / Neuron / Channel. This page describes content that has been created by the project for use by the public. Currently we make simulation engines, visualization environments, and data sets available. Sibernetic is the code base that currently implements the crawling model. Sibernetic is a C / Python code base by Palyanov, Khayrulin and Vella that has been created expressly for the purpose of doing research and building the model quickly. More information on running Sibernetic is available online.

3

Community - OpenWorm

http://docs.openworm.org/en/latest/Projects/community-proj

Muscle / Neuron / Channel. The effort to build the OpenWorm open science community is always ongoing. Outreach via Social Media. You can find out more about our OpenWorm community on another page. Create documentation and package to allow others to play with the model optimization code. Have a parallel Spanish version of the site. Mention the call for C programmers to assist with Sibernetic on the Get Involved page. All issues related to help with documentation. Can be found on GitHub.

4

Modelling - OpenWorm

http://docs.openworm.org/en/latest/modeling

Closing the loop with neuromechanical modeling. Muscle / Neuron / Channel. Our main goal is to build the world's first virtual organism- an. In order to achieve these goals, we first began with an informal cartoon representation of a breakdown of cell types and various biological processes that the worm has. Here is a representation of a small subset of those processes, where arrows show the causal relationship between processes and cell types:. Crawling behavior of worms is relatively easy to measure.

5

FAQ - OpenWorm

http://docs.openworm.org/en/latest/faq

Muscle / Neuron / Channel. OpenWorm simulation and modeling. OpenWorm links and resources. Three different Nobel prizes have been awarded for work on this worm, and it is increasingly being used as a model for better understanding disease and health relevant to all organisms, including humans. When making a complex computer model, it is important to start where the data are the most complete. What does the real worm do? It has all sorts of behaviors! It finds food and mates. It avoids toxins and predators.

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Muscle / Neuron / Channel. OpenWorm is an open source project and open science community dedicated to creating the world's first whole organism in a computer, a. Nematode, via bottom-up "systems biology" computational modeling. It is an association of highly motivated scientists, engineers, coders, and curious citizens from around the world who believe in open science and open access. OpenWorm is actively working to achieve its goal - creating the world's first virtual organism in a computer - by:. Our m...

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