gbrowse.informatics.jax.org

Generic Genome Browser

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. GBrowse 2.0 HOWTO.

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Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. GBrowse 2.0 HOWTO.

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3 var/www/gbrowse2/example scripts

4 example databases

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8 etc/init d/gbrowse start

9 alternative urls

10 http / your host/gb2/gbrowse/yeast

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Generic Genome Browser | gbrowse.informatics.jax.org Reviews

https://gbrowse.informatics.jax.org

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. GBrowse 2.0 HOWTO.

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gbrowse.informatics.jax.org

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Build 38 Mouse Data: 81.73 kbp from 5:75,971,012..76,052,746

http://gbrowse.informatics.jax.org/gb2/gbrowse/yeast_renderfarm

MGI Mouse Genome Browser on build GRCm38. Help with this browser. Show my user ID. Build 38 Mouse Data: 81.73 kbp from 5:75,971,012.76,052,746. Build 38 Mouse Data. Show 81.73 kbp. Use of this browser is now heavily deprecated due to MGI adopting JBrowse as its main sequence browser. While GBrowse will continue to be updated for the time being a large number of our tracks are now only. Available on the new browser. You can find JBrowse here. Show Active Tracks Only. Gene Traps DNA Tags.

2

Build 38 Mouse Data: 81.73 kbp from 5:75,971,012..76,052,746

http://gbrowse.informatics.jax.org/gb2/gbrowse/yeast

MGI Mouse Genome Browser on build GRCm38. Help with this browser. Show my user ID. Build 38 Mouse Data: 81.73 kbp from 5:75,971,012.76,052,746. Build 38 Mouse Data. Show 81.73 kbp. Use of this browser is now heavily deprecated due to MGI adopting JBrowse as its main sequence browser. While GBrowse will continue to be updated for the time being a large number of our tracks are now only. Available on the new browser. You can find JBrowse here. Show Active Tracks Only. Gene Traps DNA Tags.

3

Build 38 Mouse Data: 81.73 kbp from 5:75,971,012..76,052,746

http://gbrowse.informatics.jax.org/gb2/gbrowse/pop_demo

MGI Mouse Genome Browser on build GRCm38. Help with this browser. Show my user ID. Build 38 Mouse Data: 81.73 kbp from 5:75,971,012.76,052,746. Build 38 Mouse Data. Show 81.73 kbp. Use of this browser is now heavily deprecated due to MGI adopting JBrowse as its main sequence browser. While GBrowse will continue to be updated for the time being a large number of our tracks are now only. Available on the new browser. You can find JBrowse here. Show Active Tracks Only. Gene Traps DNA Tags.

4

Example Perl scripts that use the GBrowse2 REST API

http://gbrowse.informatics.jax.org/example_scripts

This director contains little Perl scripts that illustrate how to do stuff with the GBrowse2 REST API. Gbrowse get sessionid.pl. Print out a valid GBrowse session. A new session will be created the first time it is used. On subsequent invocations, it will reuse the existing session. The session cookie is stored in /.gbrowse session. Delete this file to force a new session. Gbrowse new sessionid.pl. Start a brand new GBrowse session and print out the session ID. A new session will be used every time.

5

GBrowse Administration Tutorial

http://gbrowse.informatics.jax.org/tutorial/tutorial.html

Generic Genome Browser Version 2: A Tutorial for Administrators. Author: Lincoln Stein, 20 January 2010. This is an extensive tutorial to take you through the main features and gotchas of configuring GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl and the other GBrowse dependencies. If you haven't, please see the GBrowse HOWTO. During most of the tutorial, we will be using the "in-memory" GBrowse database (no relational database required! To introduce you to...

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点此联系域名所有人 Click here to contact the domain owner. Please visit this independent 3rd party. It is a general-term, non-commercial and private and personal domain, the domain itself and its owner is not connected or affiliated with any company, organization or trademark. It does not offer/sell any commodities or services. If you think your arrival is unexpected, please recheck or use search engines. Please come back later, for any possible update. Powered and Protected by DomainStaff.

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SLEP (NCBI b37/hg19): 2.001 kbp from chr20:3,052,000..3,054,000

Help with this browser. Show my user ID. Log in / create account. SLEP (NCBI b37/hg19): 2.001 kbp from chr20:3,052,000.3,054,000. Chr2:136,545,000.136,595,000. Show 2.001 kbp. Disease Associations ( Showing 5 of 5 subtracks. TargetScan v6 miRNA target sites. CNVs important in psychiatry. Psychiatric Genomics Consortium GWAS results. Segmental duplications (unique regions). Regions of extended LD. Show Active Tracks Only. Autism genes and CNVs. Psychiatric genome-wide linkage meta-analysis results.

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gbrowse.informatics.jax.org

Generic Genome Browser

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. GBrowse 2.0 HOWTO.

gbrowse.maizegdb.org

Maize B73 RefGen_v2: Chr1:34400..530000

Recenter on this region. Showing 495.6 kbp from Chr1, positions 34,400 to 530,000(Some number of cM). Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. Click one of the rulers to center on a location, or click and drag to select a region. Use the Scroll/Zoom buttons to change magnification and position. Chr1:34,400.530,000. Chr2:2,000,000.4,000,000. UNMAPPED:34,400.530,000. Upload your own data]. Download Decorated FASTA File. Maize B73 RefGen v1.

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D. melanogaster Genomic Browser: 57 kbp from 2L:123,000..180,000

Help with this browser. Show my user ID. Log in / create account. D melanogaster Genomic Browser: 57 kbp from 2L:123,000.180,000. Download Decorated FASTA File. C elegans Genomic Browser. D melanogaster Genomic Browser. ModENCODE C.brenneri DB. ModENCODE C.briggsae DB. ModENCODE C.japonica DB. ModENCODE C.remanei DB. ModENCODE D.ananassae DB. ModENCODE D.mojavensis DB. ModENCODE D.pseudoobscura DB. ModENCODE D.simulans DB. ModENCODE D.virilis DB. ModENCODE D.yakuba DB. Show Active Tracks Only. Dosage com...

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Generic Genome Browser

Welcome to the Generic Genome Browser! An example in-memory database for S. cerevisiae chromosomes 1 and 2 has been installed for you. Try it at this URL:. For future reference, here is where you've installed GBrowse's various components:. GBrowse documentation, stylesheets and in-memory databases. Also available for browsing at http:/ localhost/gbrowse. GBrowse CGI (web) scripts. Available for browsing at http:/ localhost/gbrowse/tutorial/tutorial.html. Has instructions for running GBrowse on top of a B...

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gbrowse.vital-it.ch

Generic Genome Browser

Welcome to the Generic Genome Browser! An example in-memory database for S. cerevisiae chromosomes 1 and 2 has been installed for you. Try it at this URL:. For future reference, here is where you've installed GBrowse's various components:. GBrowse documentation, stylesheets and in-memory databases. Also available for browsing at http:/ localhost/gbrowse. GBrowse CGI (web) scripts. Available for browsing at http:/ localhost/gbrowse/tutorial/tutorial.html. Home/local/gbrowse/htdocs/gbrowse/docs/pod/BIOSQL ...