pathvisio.org
FAQs - PathVisio - pathway drawing and analysis tool
http://www.pathvisio.org/documentation/faqs
A tool to edit and analyze biological pathways. PathVisio – pathway drawing and analysis tool. Skip to primary content. Skip to secondary content. Gene expression / omics data. When starting PathVisio, you might see an error like this:. In the latest Java update the security settings for self-signed applications have been adapted (Java 7 Update 51). Self-Signed applications, like Pathvisio, are blocked on high security level. PathVisio is still safe to run. Where can I ask questions? GenMAPP has many goo...
genechip.ucsf.edu
Resources
http://genechip.ucsf.edu/links.html
Gene Expression Array Data. A LIST OF USEFUL SITES. National Center for Biotechnology Information. Whitehead Institute/MIT Center for Genome Research. KEGG: Kyoto Encyclopedia of Genes and Genomes. Weizmann Institute Bioinformatics Unit. Expression Data and Analysis. The Microarray Project at NHGRI. GenMapp at the Conklin Lab, Gladstone Institutes. Danish Center for Human genome research. OMIM Online Mendelian Inheritance in Man. The Mouse Genome Informatics MGI.
nucleomics.be
Links | VIB Nucleomics Core
http://www.nucleomics.be/about-us/links
NextGen Sequencing, Microarrays, nCounter and Bioinformatics. BioNano Genomics – Irys System. Terms & Conditions. Bioinformatics and Gene Expression. ArrayExpress at the EBI. ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with MGED recommendations.The ArrayExpress Data Warehouse stores gene-indexed expression profiles from a curated subset of experiments in the repository. PathVisio is a pathway visualization and editing program using...
xmlpipedb.cs.lmu.edu
XMLPipeDB: News
http://xmlpipedb.cs.lmu.edu/news.shtml
A Project of the LMU Bioinformatics Group. A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources. March 3, 2011. Str 26695, Salmonella typhimurium. ATCC 700720/SGSC1412/LT2, Mycobacterium smegmatis. ATCC 700084/mc(2)155, and Updated Mycobacterium tuberculosis. ATCC 25618/H37Rv GenMAPP Gene Databases Now Available. The XMLPipeDB project has released standard Helicobacter pylori. Str 26695, Salmonella typhimurium. ATCC 700720/SGSC1412/LT2, Mycobacterium smegmatis. Dr Kam Dah...
xmlpipedb.cs.lmu.edu
XMLPipeDB: People
http://xmlpipedb.cs.lmu.edu/people.shtml
A Project of the LMU Bioinformatics Group. A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources. XMLPipeDB was created by the Bioinformatics Group at Loyola Marymount University, a collaborative research group founded by Dr. Kam D. Dahlquist. And Dr. John David N. Dionisio. Department of Electrical Engineering. XMLPipeDB development began in Spring 2006 as a group project in a special studies course in Bioinformatics (CMSI 698/BIOL 498). Kam D Dahlquist, Ph.D. GenMAPP Bui...
bigcat.unimaas.nl
Bioinformatics Services - BiGCaT - Wiki
http://www.bigcat.unimaas.nl/wiki/index.php/Bioinformatics_Services
From BiGCaT - Wiki. Almost all of these projects are collaborative projects with other research groups, see the individual project pages for details. Quality Control, pre-processing, normalization and statistics of Affymetrix microarrays. Software framework for identifier mapping. Development site for Systems Biology infrastructure. Pathway editor and pathway analysis tool. Pathways for the people. NTC-R server (NTC calculation server). Affymetrix MAS5 and GCOS. Agilent Feature Extraction software. PathV...
xmlpipedb.cs.lmu.edu
XMLPipeDB: Documentation
http://xmlpipedb.cs.lmu.edu/documentation.shtml
A Project of the LMU Bioinformatics Group. A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources. XMLPipeDB Manual (417K PDF). Direct from this site. UniProtDB relational database schema as generated by XSD-to-DB. To view Schema Spy. GODB relational database schema as generated by XSD-to-DB. To view Schema Spy. GenMAPPBuilder relational database schema. To view Schema Spy. Read Me for Arabidopsis thaliana. 268K PDF, revision 20090610). Direct from this site. Gene Map Annot...
xmlpipedb.cs.lmu.edu
XMLPipeDB: Links
http://xmlpipedb.cs.lmu.edu/links.shtml
A Project of the LMU Bioinformatics Group. A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources. Source of UniProt proteome sets for individual species (use the XML format for XMLPipeDB software) and Gene Ontology associations (GOA). XMLPipeDB software uses the OBO XML format. Seaver College of Science and Engineering. Last modified on Sunday, 09-Mar-2014 19:33:09 PDT.
xmlpipedb.cs.lmu.edu
XMLPipeDB: About
http://xmlpipedb.cs.lmu.edu/about.shtml
A Project of the LMU Bioinformatics Group. A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources. Software for viewing and analyzing DNA microarray and other genomic and proteomic data on biological pathways. XMLPipeDB was created by the Bioinformatics Group at Loyola Marymount University, a collaborative research group founded by Dr. Kam D. Dahlquist. And Dr. John David N. Dionisio. Department of Electrical Engineering. Seaver College of Science and Engineering.
xmlpipedb.cs.lmu.edu
XMLPipeDB
http://xmlpipedb.cs.lmu.edu/index.shtml
A Project of the LMU Bioinformatics Group. A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources. Software for viewing and analyzing DNA microarray and other genomic and proteomic data on biological pathways. March 3, 2011. Str 26695, Salmonella typhimurium. ATCC 700720/SGSC1412/LT2, Mycobacterium smegmatis. ATCC 700084/mc(2)155, and Updated Mycobacterium tuberculosis. ATCC 25618/H37Rv GenMAPP Gene Databases Now Available. Str 26695, Salmonella typhimurium. October 26, 2010.
