supfam.cs.bris.ac.uk
Download SUPERFAMILY Models, Database Dump and Genome Assignments
http://supfam.cs.bris.ac.uk/SUPERFAMILY/downloads.html
Download SUPERFAMILY Models, Database Dump and Genome Assignments. Seed sequences for models. Amazon EC2 AWS image. It is no longer necessary to install SUPERFAMILY locally. Instead you may use our EC2 AWS cloud image. To gain access to downloads from the SUPERFAMILY server a license agreement. Must be obtained, which is free for academic and commercial use. There is a short registration. The hidden Markov models are available for download in HMMER3 (/models/hmmlib 1.75.gz) format in the models d...There...
drmotifs.genouest.org
Dr Motifs – Blog
http://drmotifs.genouest.org/page/2
Pattern matching and discovery in bioinformatics. Back to the Dr Motifs Homepage. New versions: MEME and InterProScan. Just a few words to keep you informed about the progress of the Dr Motifs project. InterProScan 4.7 has been released a few days ago. We have installed this new version on our cluster. The main new feature is that now it uses hmmer 3 for Gene3D and Pfam databanks. This means faster and better results hopefully! Our web form is still available at iprscan.genouest.org. Installing new tools;.
morus.swu.edu.cn
MnTEdb
http://morus.swu.edu.cn/mntedb
MnTEdb, Morus notabilis. Quick tips for using MnTEdb. Download sequence from MnTEdb. Blast sequence with MnTEdb. GO to tools- blast. Search one or more sequences against TE-related hmm database. Go to tools- hmm. Find and extract open reading frames (ORFs) in one or more nucleotide. Go to tools- getorf. Visualize the relationship between genes and TEs. Go to tools- JBrowse. MnTEdb is a new, specific and comprehensive database, which focused on the TEs data in mulberry plants. This work was funded by the ...
fungene.cme.msu.edu
Functional Gene Pipeline / Repository
http://fungene.cme.msu.edu/index.spr;jsessionid=3A72F1229C03946466961A26374EEB08.neptune
If you use RDP's FunGene,. Please cite our most recent article. Begin with these gene links:. Version 8.6 - GenBank 214 (as of 6/22/2016). Process your own Functional Gene data using our new. 8212; Syed Hashsham. 8212; Syed Hashsham. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Syed Hashsham. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Syed Hashsham. 8212; Tamara Tsoi Cole. 8212; Tamara Tsoi Cole. 8212; Tim Johnson.
rcsb.org
RCSB PDB - REST Web Service
http://www.rcsb.org/pdb/software/rest.do
You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox. Need a new MyPDB account? Forgot login or password? Need more MyPDB instructions? WwPDB Deposition and Annotation System. Deposition Help and Resources. Unreleased & New Entries. Drugs and Drug Targets. Sequence and Structure Alignment. Map Genomic Position to Protein. Coordinates and Experimental Data. FTP Archive and Services.
viiia.org
DomStratStats
http://www.viiia.org/domStratStats/.
Estadísticas estratificadas para dominios de proteínas. Por Alejandro Ochoa García, John D Storey, Manuel Llinás, Mona Singh. Computa valores q y FDRs locales para dominios, y valores q con gradas (combinando informacion de dominios y sequencias de HMMER3). Necesitas Javascript para poder usar este menú adecuadamente! Aquí puedes bajar nuestro código, y aprender como usarlo. Esta página es el manual del programa. Y valores (E ). Pero aquí introducimos los valores (q ). Este proyecto ahora está en GitHub.
biologystuffs.blogspot.com
It's Everything About Biology: Juli 2015
http://biologystuffs.blogspot.com/2015_07_01_archive.html
It's Everything About Biology. This blog is all about knowledge of Biology that I understand and would like to share to the readers. Kamis, 30 Juli 2015. Sebuah Tulisan Bioinformatika – Menujum Motif Urutan. 8220;Mengungkap rahasia alam”, katanya “…dan mendapat hadiah Nobel”, sambungnya. Caranya sebenarnya mudah saja. Untuk setiap potongan atau genom secara keseluruhan, lakukan pengujian:. Apakah segmen ini menghasilkan protein atau tidak. Apakah segmen itu mengatur penghasilan protein atau tidak. Jadi, ...
bagel.molgenrug.nl
Weblinks
http://bagel.molgenrug.nl/index.php/web-links
Skip to main navigation. Skip to first column. Skip to second column. Web sites, software and systems used by BAGEL. Publication of BAGEL (2006). Publication of BAGEL2 (2010). Resource for genome sequences. Mirror of the NCBI genome database. PFAM hmm models database. TIGRFAM hmm models database. Universel reference database for annotation proteins. Database system used by BAGEL. Linux platform on which BAGEL runs. Web interface for BAGEL. Last Updated on Thursday, 07 February 2013 16:42.
nrpssp.com
NRPSsp Non-Ribosomal Peptide Synthase Substrate Predictor
http://www.nrpssp.com/download.php
Non-Ribosomal Peptide Synthase Substrate Predictor. Download the HMMs: download. Download the anotated pairs of A domain - substrate: download. Download all the A domains founded in UniProt download. 25/10/2011: Database and predictor have been updated. 15/04/2011: Beta tests have been completed. 01/03/2011: The website has been inaugurated. Biosequence analysis using HMM. Specificity prediction of A domains in NRPS. Domain search program for NRPS.
nrpssp.com
NRPSsp Non-Ribosomal Peptide Synthase Substrate Predictor
http://www.nrpssp.com/about.php
Non-Ribosomal Peptide Synthase Substrate Predictor. Carlos Prieto, Ph.D. Carlos García-Estrada, Ph.D. Email: c.gestrada@unileon.es. Email: diego.lorenzana@telefonica.net. Juan Francisco Martín, Ph.D. Email: jf.martin@unileon.es. NRPSsp: Non-Ribosomal Peptide Synthase substrate predictor. C Prieto; C Garcia-Estrada; D Lorenzana; JF Martin. Bioinformatics 2011; doi: 10.1093/bioinformatics/btr659. 25/10/2011: Database and predictor have been updated. 15/04/2011: Beta tests have been completed.
