Last update: May 9, 2015. Plant Homolog Database (PHD) is a database composed of plant homologous genes. It combines phylogenetic and heuristic best-match approaches, yielding an accurate collection of more than 14,000 homologous groups covering multiple different species (including rice, Arabidopsis thaliana, tomato, maize, sorghum, etc). Or Species Oryza sativa subsp. japonica. O sativa subsp. japonica. O sativa subsp. indica.
http://homolog.ic4r.org/
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IC4R Homolog Database | homolog.ic4r.org Reviews
https://homolog.ic4r.org
Last update: May 9, 2015. Plant Homolog Database (PHD) is a database composed of plant homologous genes. It combines phylogenetic and heuristic best-match approaches, yielding an accurate collection of more than 14,000 homologous groups covering multiple different species (including rice, Arabidopsis thaliana, tomato, maize, sorghum, etc). Or Species Oryza sativa subsp. japonica. O sativa subsp. japonica. O sativa subsp. indica.
homolog.ic4r.org
IC4R Homolog Database
http://homolog.ic4r.org/misc/download
Last update: May 9, 2015. Please cite IC4R publication ( Information Commons for Rice (IC4R) (2016) Nucleic Acids Research. In your manuscript if you want to use our dataset. All homolog groups with corresponding gene list:. Groups.tsv.tar.xz. Pairwise bootstrap value, Ka/Ks, Ka and Ks value:. Gpvalues.tsv.tar.xz.
IC4R Homolog Database
http://homolog.ic4r.org/specieses/ORYME
Last update: May 9, 2015.
IC4R Homolog Database
http://homolog.ic4r.org/specieses/POPTR
Last update: May 9, 2015. Populus trichocarpa (Western balsam poplar).
IC4R Homolog Database
http://homolog.ic4r.org/specieses/SORBI
Last update: May 9, 2015.
IC4R Homolog Database
http://homolog.ic4r.org/groups/PHG-00015
Last update: May 9, 2015. O sativa subsp. japonica. O sativa subsp. indica. Draw the tree with:. Oryza sativa subsp. japonica. Oryza sativa subsp. indica. Oryza sativa subsp. indica.
TOTAL PAGES IN THIS WEBSITE
20
Os06g0107700 - RiceWiki
http://wiki.ic4r.org/index.php/Os06g0107700
Man Li (2016) Gene: "Os06g0107700" in RiceWiki. Available at http:/ wiki.ic4r.org/index.php? Title=Os06g0107700&oldid=271571 (Last update: Jul 02, 2016). [ See details. Labs working on this gene. The stoichiometry of two LFNR. Plays an important role in electron partitioning between carbon fixation and nitrogen assimilation. Electrons might be transferred preferentially from Fd to the nitrogen assimilation pathway when OsLFNR2. Accounts for a larger portion of the total LFNR. Fl-cDNAs results in a decrea...
RiceWiki:Joining - RiceWiki
http://wiki.ic4r.org/index.php/RiceWiki:Joining
Involves the translation and integration of information relevant to biology into a database or resource that enables integration of the scientific literature as well as large data sets (from International Society for Biocuration. Biocuration enhances data interoperability and consistency, and is critical in translating biomedical data into scientific discovery. The 10th International Biocuration Conference. Will be held in Stanford University from March 26th to 29th, 2017 in the United States.
Os01g0192000 - RiceWiki
http://wiki.ic4r.org/index.php/Os01g0192000
Jian Sang (2016) Gene: "Os01g0192000" in RiceWiki. Available at http:/ wiki.ic4r.org/index.php? Title=Os01g0192000&oldid=271531 (Last update: Jul 01, 2016). [ See details. Is located at rice chromosome 1, which is involved in delaying leaf senescence in rice. It was reported as OsDOS. By Chinese plant molecular biologists in 2006. Wild Type and Mutants. Labs working on this gene. OsDOS mutant (RNAi) VS. WT(from reference). Research shows that OsDOS. Scientists propose that OsDOS. Wild Type and Mutants.
Os01g0848400 - RiceWiki
http://wiki.ic4r.org/index.php/Os01g0848400
Jian Sang (2016) Gene: "Os01g0848400" in RiceWiki. Available at http:/ wiki.ic4r.org/index.php? Title=Os01g0848400&oldid=271474 (Last update: Jul 01, 2016). [ See details. Was first reported as qSH1. In 2006 by the researchers from Japan. Encodes a BEL1-type homeobox protein. Labs working on this gene. Figure 1.qSH1 is required for formation of the abscission layer at the base of the rice grain. The Fig. 1c shows the Non seed-shattering habits of Nipponbare, Kasalath, and NIL(qSH1). Breaking tens...A lar...
Os09g0286400 - RiceWiki
http://wiki.ic4r.org/index.php/Os09g0286400
Dao Shui, Zhennan Wang (2016) Gene: "Os09g0286400" in RiceWiki. Available at http:/ wiki.ic4r.org/index.php? Title=Os09g0286400&oldid=271499 (Last update: Jul 01, 2016). [ See details. Exchanger in rice ( Oryza sativa. Labs working on this gene. Antiporters catalyze the exchange of Na. ATPase, which acts to exclude Na from animal and fungal cells. Therefore, in plants, H. Inorganic pyrophosphatase are the primary active transporters that generate an H -motive force, whereas the Na. Is graphically present...
Os03g0180800 - RiceWiki
http://wiki.ic4r.org/index.php/Os03g0180800
Dao Shui, Zhennan Wang, Ye Zhang (2016) Gene: "Os03g0180800" in RiceWiki. Available at http:/ wiki.ic4r.org/index.php? Title=Os03g0180800&oldid=271561 (Last update: Jul 01, 2016). [ See details. The rice gene Os03g0180800. Was reported as OsTIFY11a. Labs working on this gene. The PCR products were cloned into. P1301H (modified based on pCAMBIA1301) which has the stress-inducible promoter of OsLEA3-I. JA signaling gene Os03g0180800. A stress-inducible gene, was found to significantly increase tolerance.
Os10g0563600 - RiceWiki
http://wiki.ic4r.org/index.php/Os10g0563600
Li Mengwei, Ye Zhang (2016) Gene: "Os10g0563600" in RiceWiki. Available at http:/ wiki.ic4r.org/index.php? Title=Os10g0563600&oldid=271535 (Last update: Jul 01, 2016). [ See details. Is a member of MSRA, which belongs to methionine sulfoxide reductases (MSRs). Labs working on this gene. Are constitutively expressed in all organs and can be induced by various stress conditions. Overexpression of either OsMSRA4.1. Plays an important role in stress responses. Cloning of OsMSRA4.1. Enhances yeast tolerance t...
Category:Genes - RiceWiki
http://wiki.ic4r.org/index.php/Category:Genes
A collection of rice genes. Pages in category "Genes". The following 200 pages are in this category, out of 86,210 total. Previous 200) ( next 200. Previous 200) ( next 200. Retrieved from " http:/ wiki.ic4r.org/index.php? This page was last modified on 16 October 2014, at 16:51. This page has been accessed 20,113 times.
Os12g0583700 - RiceWiki
http://wiki.ic4r.org/index.php/Os12g0583700
Ye Zhang, Zhennan Wang, Li Mengwei (2016) Gene: "Os12g0583700" in RiceWiki. Available at http:/ wiki.ic4r.org/index.php? Title=Os12g0583700&oldid=271549 (Last update: Jul 01, 2016). [ See details. Is a salt and drought stress responsive TFIIIA-type zinc finger protein gene in rice. Labs working on this gene. Identified a total of 189 C2H2-type zinc finger proteins in the indica rice genome and found 26 genes that were upregulated by cold, drought or salt stress. By gene expression analysis, Xu et al.
Os06g0683400 - RiceWiki
http://wiki.ic4r.org/index.php/Os06g0683400
Man Li, Jian Sang (2016) Gene: "Os06g0683400" in RiceWiki. Available at http:/ wiki.ic4r.org/index.php? Title=Os06g0683400&oldid=271491 (Last update: Jul 01, 2016). [ See details. The rice Os06g0683400 was reported as OsCCD1. In 2016 by researchers from Chinese Academy of Sciences. OsCCD1. Is a small Ca2 -binding protein with one EF-hand motif in rice. This protein was asmall protein with M.W. 13.9 kDa, pI 5.08. Labs working on this gene. Is a small calcium-binding protein with one EF-handmotif. Overexpr...
TOTAL LINKS TO THIS WEBSITE
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IC4R Homolog Database
Last update: May 9, 2015. Plant Homolog Database (PHD) is a database composed of plant homologous genes. It combines phylogenetic and heuristic best-match approaches, yielding an accurate collection of more than 14,000 homologous groups covering multiple different species (including rice, Arabidopsis thaliana, tomato, maize, sorghum, etc). Or Species Oryza sativa subsp. japonica. O sativa subsp. japonica. O sativa subsp. indica.
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