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Mizuguchi Laboratory | National Institutes of Biomedical Innovation, Health and Nutrition

We are based in the National Institutes of Biomedical Innovation, Health and Nutrition, Japan. We carry out bioinformatics and computational biology research into drug discovery and development (with special emphasis on early-stage target discovery and toxicity prediction). Our research involves both the analysis of real-life experimental data and the development of novel computational techniques, aiming to establish systems approaches to drug discovery.

http://www.mizuguchilab.org/

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CONTACTS AT MIZUGUCHILAB.ORG

National Institute of Biomedical Innovation

Kenji Mizuguchi

7-6-8 ●●●●●●-Asagi

Ib●●ki , Osaka, 567-0085

JP

81.7●●●●9890
81.7●●●●9881
ke●●●@nibio.go.jp

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National Institute of Biomedical Innovation

Kenji Mizuguchi

7-6-8 ●●●●●●-Asagi

Ib●●ki , Osaka, 567-0085

JP

81.7●●●●9890
81.7●●●●9881
ke●●●@nibio.go.jp

View this contact

National Institute of Biomedical Innovation

Kenji Mizuguchi

7-6-8 ●●●●●●-Asagi

Ib●●ki , Osaka, 567-0085

JP

81.7●●●●9890
81.7●●●●9881
ke●●●@nibio.go.jp

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Mizuguchi Laboratory | National Institutes of Biomedical Innovation, Health and Nutrition | mizuguchilab.org Reviews
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We are based in the National Institutes of Biomedical Innovation, Health and Nutrition, Japan. We carry out bioinformatics and computational biology research into drug discovery and development (with special emphasis on early-stage target discovery and toxicity prediction). Our research involves both the analysis of real-life experimental data and the development of novel computational techniques, aiming to establish systems approaches to drug discovery.
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Mizuguchi Laboratory | National Institutes of Biomedical Innovation, Health and Nutrition | mizuguchilab.org Reviews

https://mizuguchilab.org

We are based in the National Institutes of Biomedical Innovation, Health and Nutrition, Japan. We carry out bioinformatics and computational biology research into drug discovery and development (with special emphasis on early-stage target discovery and toxicity prediction). Our research involves both the analysis of real-life experimental data and the development of novel computational techniques, aiming to establish systems approaches to drug discovery.

SUBDOMAINS

targetmine.mizuguchilab.org targetmine.mizuguchilab.org

TargetMine | Data warehouse for target discovery

An overview of the list function. Create a list form results table. Save the query results. Convert a list into a different type. List of data sources in TargetMine. A tutorial for target prioritization. Data warehouse for drug discovery. The use of TargetMine web-based tools and web services is free to ALL. Users, subject to terms of use. TargetMine is FREE now. Tutorial movies for TargetMine (English). Keyword, Template Search. List Search, QueryBuilder. To know about TargetMine.

INTERNAL PAGES

mizuguchilab.org mizuguchilab.org
1

cbs-pred-home

http://mizuguchilab.org/netasa/cbs-pred

2

CCR XP

http://mizuguchilab.org/netasa/ccrxp

Enter a valid four-letter PDB ID:. CCR XP derived images (clusters in graphics). CCRs in DNA-binding proteins. Welcome to CCR XP:. Explorer for clusters of conserved residues in protein structures. However, finding such clusters is time consuming and requires several computational steps, specially if a certain critereon on selecting residues, based on their structural or physical charachterstics is implemented. An objective protocol and tool to determine CCRs is therefore needed. Alternatively, CCRXP ADV.

3

License | Mizuguchi Laboratory

http://mizuguchilab.org/license

Appilcations of target prioritization. From molecular mechanisms of breast cancer cell growth to novel therapeutic strategies. Prediction of protein-protein interactions. What is target prioritization and why? What is target validation? Target discovery through network-based function prediction. Development of an international pharmaceutical innovation value chain for in silico drug discovery. Development of a novel method for modelling dynamic structures of membrane proteins. Sequence and structural det...

4

FUGUE

http://mizuguchilab.org/fugue

National Institutes of Biomedical Innovation, Health and Nutrition. Department of Biochemistry, University of Cambridge. FUGUE: Sequence-structure homology recognition. FUGUE has changed its URL. Please bookmark http:/ mizuguchilab.org/fugue/. A bug has been fixed in the alignment server. Uploading a PDB file now works properly. 7 Mar 2007 (IMPORTANT). A new alignment server available. 13 Dec 2006 (IMPORTANT). A new temporary server (homology search) available. 24 Aug 2006 (IMPORTANT). The latest version...

5

Residue-pair contact prediction in proteins from sequence

http://mizuguchilab.org/netasa/ppipp

This web server takes fasta sequences of two proteins and predicts pairs of interacting residues between them. The input is a pair of amino acid sequences in the fasta format. Sequence size for each protein is limited to 300 residues. Longer sequences will be truncated to this length. Enter your first protein sequence below in plain text (FASTA format; No header). Enter your second protein sequence below in plain text (FASTA format; No header). Some links are under construction).

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LINKS TO THIS WEBSITE

targetmine.mizuguchilab.org targetmine.mizuguchilab.org

TOGO TV | TargetMine

http://targetmine.mizuguchilab.org/tutorials/togo-tv

An overview of the list function. Create a list form results table. Save the query results. Convert a list into a different type. List of data sources in TargetMine. A tutorial for target prioritization. TargetMine tutorial movies are available on TOGO TV. Tutorial movies for TargetMine Keyword, Template Search. Tutorial movies for TargetMine List Search, QueryBuilder. TargetMine now is featured in OMICtools web site. Doi:10.1371/journal.pone.0017844. TargetMine is developed by the.

adjuvantdb.nibiohn.go.jp adjuvantdb.nibiohn.go.jp

Adjuvant Database Project/Participants

http://adjuvantdb.nibiohn.go.jp/participants.html

Daron M. Standley.

targetmine.mizuguchilab.org targetmine.mizuguchilab.org

News | TargetMine

http://targetmine.mizuguchilab.org/tag/news

An overview of the list function. Create a list form results table. Save the query results. Convert a list into a different type. List of data sources in TargetMine. A tutorial for target prioritization. TargetMine build 20161026 has been released. TargetMine build 20160930 has been released. TargetMine build 20160830 has been released. TargetMine now is featured in OMICtools web site. TargetMine now is featured in OMICtools web site. https:/ omictools.com/gene-set-analysis-category. Read more ›. Doi:10&...

targetmine.mizuguchilab.org targetmine.mizuguchilab.org

Manipulate the lists | TargetMine

http://targetmine.mizuguchilab.org/tutorials/lists/manipulate-the-lists

An overview of the list function. Create a list form results table. Save the query results. Convert a list into a different type. List of data sources in TargetMine. A tutorial for target prioritization. You can manipulate your list, for example take intersection or difference, in the ‘View’ section under the ‘Lists’ tab. You can manipulate your lists, to intersect, to subtract and so on. The actions could be found above your lists. Suppose you want to find the common genes within 2 lists. You can.

targetmine.mizuguchilab.org targetmine.mizuguchilab.org

Templates | TargetMine

http://targetmine.mizuguchilab.org/tutorials/templates

An overview of the list function. Create a list form results table. Save the query results. Convert a list into a different type. List of data sources in TargetMine. A tutorial for target prioritization. Is accessible from the TargetMine home page or via tabs in the menu bar. There are many public templates in TargetMine. You can filter them by typing keywords or by categories in the drop-down list. Input a string or click on the checkbox to constrain on a list. The left side are the transcription factors.

targetmine.mizuguchilab.org targetmine.mizuguchilab.org

An overview of the list function | TargetMine

http://targetmine.mizuguchilab.org/tutorials/videos/an-overview-of-the-list-function

An overview of the list function. Create a list form results table. Save the query results. Convert a list into a different type. List of data sources in TargetMine. A tutorial for target prioritization. An overview of the list function. An overview of the list function. Your browser does not support the video tag. An overview of the list function. Doi:10.1371/journal.pone.0017844. TargetMine is developed by the.

targetmine.mizuguchilab.org targetmine.mizuguchilab.org

Publications | TargetMine

http://targetmine.mizuguchilab.org/category/publications

An overview of the list function. Create a list form results table. Save the query results. Convert a list into a different type. List of data sources in TargetMine. A tutorial for target prioritization. We have published a new article in Database (Oxford) journal that describes the enhanced and upgraded TargetMine with new and improved features for data analysis. An integrative data analysis platform for gene set analysis and knowledge discovery in a data …. Read more ›. Read more ›. Read more ›. A new ...

multicomp.nibiohn.go.jp multicomp.nibiohn.go.jp

MultiCoMP: Database of Multiple Conformations of Membrane Proteins

http://multicomp.nibiohn.go.jp/white.html

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. 62; Membrane Proteins of Known 3D Structure. Protein Cutoff X (%). Proteins having a percentage sequence identity (%) ≥ X with the reference protein are considered related and appear in the list on this page. Conformation Cutoff Y (Å). Structures with a Cα RMSD value (Å) Y are considered distinct conformations and clustered separately as Conformational Group 01, 02, and so on.

multicomp.nibiohn.go.jp multicomp.nibiohn.go.jp

MultiCoMP: Database of Multiple Conformations of Membrane Proteins

http://multicomp.nibiohn.go.jp/advanced.html

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. Eg, outer membrane protein ompg. 62; Browse TC Tree. Eg, 1B.21.1.1. 62; Browse OPM Tree. Eg, 12.08.01. Protein Cutoff X (%). Proteins having a percentage sequence identity (%) ≥ X with the reference protein are considered related and appear in the list on this page. Conformation Cutoff Y (Å). This project was funded by JST-BIRD.

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OTHER SITES

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Mark Mizuguchi

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和食、割烹、ご宴会なら湖月

先日より始まりました OSAKA ENJOY RALLY 当店も参加しております。

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犬のしつけは千葉県の水口ドッグスクール

Http:/ mizuguchidog.blog.fc2.com/.

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mizuguchilab.org mizuguchilab.org

Mizuguchi Laboratory | National Institutes of Biomedical Innovation, Health and Nutrition

Welcome to the Mizuguchi Laboratory. We are based in the National Institutes of Biomedical Innovation, Health and Nutrition, Japan. We carry out bioinformatics and computational biology research into drug discovery and development (with special emphasis on early-stage target discovery and toxicity prediction). Our research involves both the analysis of real-life experimental data and the development of novel computational techniques, aiming to establish systems approaches to drug discovery. DrYoichi Mura...

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