proto.cs.huji.ac.il

ProtoNet Tools

ProtoNet Version 6.1 offers automatic hierarchical classification of proteins. Proteins are processed using a novel clustering algorithm which relies on their sequence distances. The ProtoNet classification hierarchically partitions the protein space into clusters of similar proteins. The lower a cluster is situated in its tree, the smaller it is and the more similar are its proteins to each other. Browsing the clustering hierarchy can provide insight as to function and structure of proteins.

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ProtoNet Tools | proto.cs.huji.ac.il Reviews

<META> DESCRIPTION

ProtoNet Version 6.1 offers automatic hierarchical classification of proteins. Proteins are processed using a novel clustering algorithm which relies on their sequence distances. The ProtoNet classification hierarchically partitions the protein space into clusters of similar proteins. The lower a cluster is situated in its tree, the smaller it is and the more similar are its proteins to each other. Browsing the clustering hierarchy can provide insight as to function and structure of proteins.

<META> KEYWORDS

1 ProtoLevel

2 ProtoDistance

3 proteins

4 clusters

5 ProtoNet

6 cluster

7 protein

8 ProtoMap

9 swissprot

10 uniprotkb/swiss-prot

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ProtoNet Tools | proto.cs.huji.ac.il Reviews

https://proto.cs.huji.ac.il

ProtoNet Version 6.1 offers automatic hierarchical classification of proteins. Proteins are processed using a novel clustering algorithm which relies on their sequence distances. The ProtoNet classification hierarchically partitions the protein space into clusters of similar proteins. The lower a cluster is situated in its tree, the smaller it is and the more similar are its proteins to each other. Browsing the clustering hierarchy can provide insight as to function and structure of proteins.

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proto.cs.huji.ac.il

1

ProtoNet Tools

http://www.proto.cs.huji.ac.il/index.php?global=protonet|no|6|61|lifetime|1|2|2&advanced_search=yes

Returns rich information about a protein. Paste your protein sequence and get the ProtoNet cluster. Protein Sequence Alignment (BLAST). Displays sequence alignment for two proteins. Check protein in cluster. Testing whether a protein belongs to a given cluster. Get ProtoNet clusters by keywords. Get ProtoNet clusters by cluster name. Get cluster card by cluster ID. Vertical perspective, returns information about a ProtoNet cluster. View ProtoNet at specific ProtoLevel.

2

ProtoNet: Get Cluster card

http://www.proto.cs.huji.ac.il/tool_cluster_card.php?global=protonet|no|6|61|lifetime|1|2|2

Protonet Tools get clusters card. Eturns information about a ProtoNet cluster. A ProtoNet cluster is identified by its numeric ID as well as the merging algorithm. Enter ProtoNet Cluster ID (e.g. 3537905 or A3537905):. Highlight clusters in a tree with:. Switch to the advanced mode. Get clusters by Cluster Name. Hebrew University, Jerusalem, Israel. proto@cs.huji.ac.il.

3

ProtoNet Tools

http://www.proto.cs.huji.ac.il/index.php

Returns rich information about a protein. Paste your protein sequence and get the ProtoNet cluster. Protein Sequence Alignment (BLAST). Displays sequence alignment for two proteins. Check protein in cluster. Testing whether a protein belongs to a given cluster. Get ProtoNet clusters by keywords. Get ProtoNet clusters by cluster name. Get cluster card by cluster ID. Vertical perspective, returns information about a ProtoNet cluster. Get the lowest common cluster of two proteins.

4

ProtoNet: Get the lowest common cluster of two proteins

http://www.proto.cs.huji.ac.il/tool_lowest_cluster.php?global=protonet|no|6|61|lifetime|1|2|2

Pg exec() [ function.pg-exec. No PostgreSQL link opened yet in /a/fr-06/lab/proto/www-prod/global functions/inc global constants.php. Pg exec() [ function.pg-exec. No PostgreSQL link opened yet in /a/fr-06/lab/proto/www-prod/global functions/inc global constants.php. Protonet Tools get the lowest common cluster of two proteins. Get the lowest common cluster of two proteins:. ID (eg. AACT HUMAN) or accession number (e.g.P24595). Protein-ID (e.g.X68737). Switch to the advanced mode.

5

ProtoNet: Get clusters by "Cluster Name"

http://www.proto.cs.huji.ac.il/tool_cluster_name.php?global=protonet|no|6|61|lifetime|1|2|2

Protonet Tools get clusters by cluster name. Get clusters by Cluster Name:. Nter exact keyword name. CATH, ENZYME, GO, Gene name, InterPro, Microarrays, PDB, Publication journals, Publication years, SCOP, Taxonomy, UniProt):. Check here to allow for inexact keyword matches, or to search by keyword ID / accession numbers (might take a while to process). Switch to the advanced mode. Hebrew University, Jerusalem, Israel. proto@cs.huji.ac.il.

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Returns rich information about a protein. Paste your protein sequence and get the ProtoNet cluster. Protein Sequence Alignment (BLAST). Displays sequence alignment for two proteins. Check protein in cluster. Testing whether a protein belongs to a given cluster. Get ProtoNet clusters by keywords. Get ProtoNet clusters by cluster name. Get cluster card by cluster ID. Vertical perspective, returns information about a ProtoNet cluster. Get the lowest common cluster of two proteins.

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