proto.informatics.jax.org

Prototypes Area Home

VLAD 1.5.1 - (NEW) VisuaL Annotation Display. Developed by: Joel Richardson. Analysis and Graphical Display of GO Annotations. Vlad - (OLD) VisuaL Annotation Display. Prototype URL: /prototypes/vlad-1.0.3. Developed by: Joel Richardson. Analysis and Graphical Display of GO Annotations. GOgraphEX - GO Graphical Explorer. Developed by: Mary Dolan. Visualization of GO and GO annotations in a graphical context. KLAM - Kim Lab Annotation Mapper. Developed by: Jill M. Recla.

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Prototypes Area Home | proto.informatics.jax.org Reviews

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VLAD 1.5.1 - (NEW) VisuaL Annotation Display. Developed by: Joel Richardson. Analysis and Graphical Display of GO Annotations. Vlad - (OLD) VisuaL Annotation Display. Prototype URL: /prototypes/vlad-1.0.3. Developed by: Joel Richardson. Analysis and Graphical Display of GO Annotations. GOgraphEX - GO Graphical Explorer. Developed by: Mary Dolan. Visualization of GO and GO annotations in a graphical context. KLAM - Kim Lab Annotation Mapper. Developed by: Jill M. Recla.

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Prototypes Area Home | proto.informatics.jax.org Reviews

https://proto.informatics.jax.org

VLAD 1.5.1 - (NEW) VisuaL Annotation Display. Developed by: Joel Richardson. Analysis and Graphical Display of GO Annotations. Vlad - (OLD) VisuaL Annotation Display. Prototype URL: /prototypes/vlad-1.0.3. Developed by: Joel Richardson. Analysis and Graphical Display of GO Annotations. GOgraphEX - GO Graphical Explorer. Developed by: Mary Dolan. Visualization of GO and GO annotations in a graphical context. KLAM - Kim Lab Annotation Mapper. Developed by: Jill M. Recla.

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proto.informatics.jax.org

1

VLAD

http://proto.informatics.jax.org/prototypes/vlad

Vlad - Gene List Analysis and Visualization. Version 1.5.2. Provides a title for the output. The run name appears at the top of the results page. If this field is blank, a default name will be generated. Specifies set(s) of objects (e.g. genes) to test. Associates a color with each set. Optional) Enter a name for the query set to label the output. A default will be provided if not specified. To do a combined analysis of multiple query sets, click "Add query set". Gene-Function annotations from MGI. The a...

2

GOgraphEX

http://proto.informatics.jax.org/prototypes/GOgraphEX

GOgraphEX: MGI Gene Ontology. Sets of graphs that make exploring GO and other OBO ontologies and annotations easier. MGI GO annotation graphs. MGI Protein Super Family (paralog) GO graphs. GO Comparative Graphs: mouse-human-rat experimental annotations. GO Comparative Graphs: HomoloGene orthology sets. GO Comparative Graphs: OrthoDisease sets. MGI MP and GO annotations for mouse genes that co-occur in MouseCyc pathways. MGI Mammalian Phenotype Graphs. MGI Mouse Anatomy Expression Graphs. For the rat genes.

3

KLAM - Kim Lab Annotation Mapper

http://proto.informatics.jax.org/prototypes/KLAM

Directly map gene IDs to Gene Ontology annotations. To see the types of IDs currently accepted by KLAM. Or upload a text file. Specify the primary organism. Specify organism ontologies to search. Specify which evidence codes to exclude. To view the GO Evidence Code Guide. Specify GO Slim IDs [optional]. To browse the GO. Enter a name for your dataset. What would you like KLAM to do with your results? This is a small, single dataset. Provide the results immediately via a download dialog box.

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informatics.jax.org

Gene Expression Literature Search

http://www.informatics.jax.org/gxdlit

Search for genome features by name, symbol, synonym, homolog, allele, or accession ID:. P53 protein cell cycle DNA damage. Search for genome features and vocabulary terms by keywords or accession ID. Use several keywords to find the most relevant results:. Resistance to fatty liver development. Lymphocyte function antigen immunodeficiency. Use asterisks (*) for wildcards at the end of partial words or genomic symbols:. Hippocamp* pyramid* cell layer. Use quotation marks to indicate phrases:. Internation...

informatics.jax.org

MGI-Mouse Gene Expression Database (GXD)

http://www.informatics.jax.org/expression.shtml

Search for genome features by name, symbol, synonym, homolog, allele, or accession ID:. P53 protein cell cycle DNA damage. Search for genome features and vocabulary terms by keywords or accession ID. Use several keywords to find the most relevant results:. Resistance to fatty liver development. Lymphocyte function antigen immunodeficiency. Use asterisks (*) for wildcards at the end of partial words or genomic symbols:. Hippocamp* pyramid* cell layer. Use quotation marks to indicate phrases:. Internation...

informatics.jax.org

MGI-Mouse Nomenclature Home Page

http://www.informatics.jax.org/mgihome/nomen/index.shtml

Search for genome features by name, symbol, synonym, homolog, allele, or accession ID:. P53 protein cell cycle DNA damage. Search for genome features and vocabulary terms by keywords or accession ID. Use several keywords to find the most relevant results:. Resistance to fatty liver development. Lymphocyte function antigen immunodeficiency. Use asterisks (*) for wildcards at the end of partial words or genomic symbols:. Hippocamp* pyramid* cell layer. Use quotation marks to indicate phrases:. Internation...

informatics.jax.org

Phenotypes, Alleles & Disease Models Search

http://www.informatics.jax.org/allele

Search for genome features by name, symbol, synonym, homolog, allele, or accession ID:. P53 protein cell cycle DNA damage. Search for genome features and vocabulary terms by keywords or accession ID. Use several keywords to find the most relevant results:. Resistance to fatty liver development. Lymphocyte function antigen immunodeficiency. Use asterisks (*) for wildcards at the end of partial words or genomic symbols:. Hippocamp* pyramid* cell layer. Use quotation marks to indicate phrases:. Internation...

informatics.jax.org

References

http://www.informatics.jax.org/reference

Search for genome features by name, symbol, synonym, homolog, allele, or accession ID:. P53 protein cell cycle DNA damage. Search for genome features and vocabulary terms by keywords or accession ID. Use several keywords to find the most relevant results:. Resistance to fatty liver development. Lymphocyte function antigen immunodeficiency. Use asterisks (*) for wildcards at the end of partial words or genomic symbols:. Hippocamp* pyramid* cell layer. Use quotation marks to indicate phrases:. Internation...

informatics.jax.org

MGI-Mouse Functional Annotation using the Gene Ontology (GO)

http://www.informatics.jax.org/function.shtml

Search for genome features by name, symbol, synonym, homolog, allele, or accession ID:. P53 protein cell cycle DNA damage. Search for genome features and vocabulary terms by keywords or accession ID. Use several keywords to find the most relevant results:. Resistance to fatty liver development. Lymphocyte function antigen immunodeficiency. Use asterisks (*) for wildcards at the end of partial words or genomic symbols:. Hippocamp* pyramid* cell layer. Use quotation marks to indicate phrases:. Internation...

informatics.jax.org

MGI 6.05 - More Resources Index

http://www.informatics.jax.org/resources.shtml

Search for genome features by name, symbol, synonym, homolog, allele, or accession ID:. P53 protein cell cycle DNA damage. Search for genome features and vocabulary terms by keywords or accession ID. Use several keywords to find the most relevant results:. Resistance to fatty liver development. Lymphocyte function antigen immunodeficiency. Use asterisks (*) for wildcards at the end of partial words or genomic symbols:. Hippocamp* pyramid* cell layer. Use quotation marks to indicate phrases:. Internation...

informatics.jax.org

MGI-Mouse Genes, Genome Features & Maps

http://www.informatics.jax.org/genes.shtml

Search for genome features by name, symbol, synonym, homolog, allele, or accession ID:. P53 protein cell cycle DNA damage. Search for genome features and vocabulary terms by keywords or accession ID. Use several keywords to find the most relevant results:. Resistance to fatty liver development. Lymphocyte function antigen immunodeficiency. Use asterisks (*) for wildcards at the end of partial words or genomic symbols:. Hippocamp* pyramid* cell layer. Use quotation marks to indicate phrases:. Internation...

informatics.jax.org

MGI 6.05 FAQ

http://www.informatics.jax.org/faq/FAQ.shtml

Search for genome features by name, symbol, synonym, homolog, allele, or accession ID:. P53 protein cell cycle DNA damage. Search for genome features and vocabulary terms by keywords or accession ID. Use several keywords to find the most relevant results:. Resistance to fatty liver development. Lymphocyte function antigen immunodeficiency. Use asterisks (*) for wildcards at the end of partial words or genomic symbols:. Hippocamp* pyramid* cell layer. Use quotation marks to indicate phrases:. Internation...

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proto.informatics.jax.org

Prototypes Area Home

VLAD 1.5.1 - (NEW) VisuaL Annotation Display. Developed by: Joel Richardson. Analysis and Graphical Display of GO Annotations. Vlad - (OLD) VisuaL Annotation Display. Prototype URL: /prototypes/vlad-1.0.3. Developed by: Joel Richardson. Analysis and Graphical Display of GO Annotations. GOgraphEX - GO Graphical Explorer. Developed by: Mary Dolan. Visualization of GO and GO annotations in a graphical context. KLAM - Kim Lab Annotation Mapper. Developed by: Jill M. Recla.

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