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ricedb.plantenergy.uwa.edu.au

Rice DB • Oryza Portal • Home

Rice DB Oryza sativa database portal: search gene identifiers, functional annotations, subcellular localisation, expression, phenotypes & transcription motifs.

http://ricedb.plantenergy.uwa.edu.au/

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Rice DB • Oryza Portal • Home | ricedb.plantenergy.uwa.edu.au Reviews
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Rice DB Oryza sativa database portal: search gene identifiers, functional annotations, subcellular localisation, expression, phenotypes & transcription motifs.
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Rice DB • Oryza Portal • Home | ricedb.plantenergy.uwa.edu.au Reviews

https://ricedb.plantenergy.uwa.edu.au

Rice DB Oryza sativa database portal: search gene identifiers, functional annotations, subcellular localisation, expression, phenotypes & transcription motifs.

INTERNAL PAGES

ricedb.plantenergy.uwa.edu.au ricedb.plantenergy.uwa.edu.au
1

Rice DB • Oryza Portal • Source • Rice DB Locus Summaries

http://ricedb.plantenergy.uwa.edu.au/about/data/TIGRSummary_

ARC Centre of Excellence for Plant Energy Biology. Rice DB Locus Summaries. Http:/ ricedb.plantenergy.uwa.edu.au/. Rice DB offers a concise summary of data for each locus. This summary is shown for all simple searches (plain IDs or full-text queries). In columnar output, summaries can be expanded into detailed flat files by clicking the magnifier icon. Usage When Searching Rice DB. Usage Viewing Rice DB Results. Summaries are the default output format for search results. Example: LOC Os02g07760.1. Took 1...

2

Rice DB • Oryza Portal • Source • SMART

http://ricedb.plantenergy.uwa.edu.au/about/data/SMART_

ARC Centre of Excellence for Plant Energy Biology. Http:/ smart.embl-heidelberg.de. Rice DB imports matched SMART. Domain annotations from MSU. Usage When Searching Rice DB. Usage Viewing Rice DB Results. Search for SMART accession IDs matched to Rice loci. Search for SMART names. Show SMART IDs and domain names can be shown. Example: show SMART for LOC Os01g01050.1. Transcript of last update. Rice DB Version Info. UWA Terms of Use Disclaimer.

3

Rice DB • Oryza Portal • Source • Gene3D

http://ricedb.plantenergy.uwa.edu.au/about/data/Gene3D_

ARC Centre of Excellence for Plant Energy Biology. Http:/ gene3d.biochem.ucl.ac.uk/Gene3D/. Rice DB imports matched Gene3D. Domain annotations from MSU. Usage When Searching Rice DB. Usage Viewing Rice DB Results. Search for Gene3D accession IDs matched to Rice loci. Search for Gene3D names. Show Gene3D IDs and domain names can be shown. Example: G3DSA:1.10.510.10. Example: show Gene3D for LOC Os01g01110.1. Transcript of last update. Rice DB Version Info. UWA Terms of Use Disclaimer.

4

Rice DB • Oryza Portal • News

http://ricedb.plantenergy.uwa.edu.au/news

ARC Centre of Excellence for Plant Energy Biology. Rice DB 0.60 Available. Rice DB Pre-release 0.60. Is now available at ricedb.plantenergy.uwa.edu.au. Rice DB 0.54 Available. Rice DB Pre-release 0.54 is now available at ricedb.plantenergy.uwa.edu.au. Rice DB 0.50 Available. Rice DB Pre-release 0.50 is now available at ricedb.plantenergy.uwa.edu.au. Data pages are currently password-protected for reviewers only. Rice DB Version Info. UWA Terms of Use Disclaimer.

5

Rice DB • Oryza Portal • Source • PROSITE

http://ricedb.plantenergy.uwa.edu.au/about/data/PROSITE_

ARC Centre of Excellence for Plant Energy Biology. Http:/ prosite.expasy.org/. Rice DB imports matched PROSITE. Domain annotations from MSU. Usage When Searching Rice DB. Usage Viewing Rice DB Results. Search for PROSITE accession IDs matched to Rice loci. Search for PROSITE names. Show PROSITE IDs and domain names can be shown. Example: show Prosite for LOC Os01g01110.1. Transcript of last update. Rice DB Version Info. UWA Terms of Use Disclaimer.

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plantenergy.edu.au plantenergy.edu.au

PEB::Tools

http://www.plantenergy.edu.au/tools.shtml

Centre Research Tools Activate Control Panel. Mitochondrial Protien Import Components (MPIC). SubCellular Proteomic Database (SUBA). The SubCellular Proteomic Database (SUBA) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations. The current version is SUBA2. Rice DB - Oryza Information Portal. Rice DB: Oryza Information Portal presents a unified searchable database, li...

plantenergy.uwa.edu.au plantenergy.uwa.edu.au

PEB::Tools

http://plantenergy.uwa.edu.au/tools.shtml

Centre Research Tools Activate Control Panel. Mitochondrial Protien Import Components (MPIC). SubCellular Proteomic Database (SUBA). The SubCellular Proteomic Database (SUBA) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations. The current version is SUBA2. Rice DB - Oryza Information Portal. Rice DB: Oryza Information Portal presents a unified searchable database, li...

millar3.biochem.uwa.edu.au millar3.biochem.uwa.edu.au

PEB::Tools

http://millar3.biochem.uwa.edu.au/tools.shtml

Centre Research Tools Activate Control Panel. Mitochondrial Protien Import Components (MPIC). SubCellular Proteomic Database (SUBA). The SubCellular Proteomic Database (SUBA) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations. The current version is SUBA2. Rice DB - Oryza Information Portal. Rice DB: Oryza Information Portal presents a unified searchable database, li...

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ARC Centre of Excellence for Plant Energy Biology. Lets you search and display gene identifiers, functional and proteomic annotations, subcellular localisation, phenotypes and upstream transcription motifs. Upstream 1 kb DNA motifs (up to 2 wildcards. Paste FASTA format IDs, or advanced syntax. In the blue box for. Search. Spreadsheet results can be downloaded as TSV (tab-separated values). Nucleotide and peptide sequences can be downloaded in multi-FASTA format. View tutorial online. Rice DB can help yo...

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