rnacentral.org rnacentral.org

rnacentral.org

RNAcentral

RNAcentral is a new resource to organise data for non-protein coding RNAs

http://www.rnacentral.org/

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CONTACTS AT RNACENTRAL.ORG

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Julie Mace

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Julie Mace

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Hi●●on , Cambridge, CB10 1SD

GB

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pu●●●●●●●●@ebi.ac.uk

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Julie Mace

Wellcome ●●●●●●●●●me Campus

Hi●●on , Cambridge, CB10 1SD

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pu●●●●●●●●@ebi.ac.uk

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PAGE TITLE
RNAcentral | rnacentral.org Reviews
<META>
DESCRIPTION
RNAcentral is a new resource to organise data for non-protein coding RNAs
<META>
KEYWORDS
1 examples rna
2 homo sapiens
3 mirbase
4 hotair
5 trna
6 expert databases
7 gtrnadb
8 lncrnadb
9 pdbe
10 refseq
CONTENT
Page content here
KEYWORDS ON
PAGE
examples rna,homo sapiens,mirbase,hotair,trna,expert databases,gtrnadb,lncrnadb,pdbe,refseq,rfam,snopy,srpdb,tair,tmrna website,vega,wormbase,all expert databases,browsable api,api documentation,sequence search,downloads,learn more,sequences,example,news
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RNAcentral | rnacentral.org Reviews

https://rnacentral.org

RNAcentral is a new resource to organise data for non-protein coding RNAs

INTERNAL PAGES

rnacentral.org rnacentral.org
1

lncRNAdb Expert Database

http://www.rnacentral.org/expert-database/lncrnadb

Your query is too short. Your query is too long. Is a database providing comprehensive annotations of eukaryotic long non-coding RNAs (lncRNAs). Distinct sequences from 10. Organisms contributed to RNAcentral. The shortest sequence has 61. Nucleotides, the longest 32,753. The average length is 3,085. Browse all lncRNAdb sequences. LncRNAdb: a reference database for long noncoding RNAs. Due to the small number of entries, a list of all lincRNAdb entries is provided instead of a sequence distribution graph.

2

SRPDB Expert Database

http://www.rnacentral.org/expert-database/srpdb

Your query is too short. Your query is too long. Signal Recognition Particle Database) provides aligned, annotated and phylogenetically ordered sequences related to structure and function of SRP. Distinct sequences from 684. Organisms contributed to RNAcentral. The shortest sequence has 30. Nucleotides, the longest 533. The average length is 173. Browse all SRPDB sequences. Kinship in the SRP RNA family. The tmRDB and SRPDB resources. Click the graph to search by sequence length. Try reloading the page.

3

Rfam Expert Database

http://www.rnacentral.org/expert-database/rfam

Your query is too short. Your query is too long. Is a collection of non-coding RNA families represented by manually curated sequence alignments, consensus secondary structures, and predicted homologues. Distinct sequences from 430,777. Organisms contributed to RNAcentral. The shortest sequence has 24. Nucleotides, the longest 10,387. The average length is 430. Browse all Rfam sequences. Rfam 12.0: updates to the RNA families database. Rfam 11.0: 10 years of RNA families. Try reloading the page. Powered b...

4

tmRNA Website Expert Database

http://www.rnacentral.org/expert-database/tmrna-website

Your query is too short. Your query is too long. TmRNA Website Expert Database. Contains predicted tmRNA sequences from RefSeq prokaryotic genomes, plasmids and phages. Distinct sequences from 7,563. Organisms contributed to RNAcentral. The shortest sequence has 23. Nucleotides, the longest 644. The average length is 334. Browse all tmRNA Website sequences. The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts. Click the graph to search by sequence length. Result.entries...

5

Help

http://www.rnacentral.org/help

Your query is too short. Your query is too long. RNAcentral is an open public resource that offers integrated access to a comprehensive and up-to-date set of ncRNA sequences. RNAcentral assigns identifiers to distinct ncRNA sequences and automatically updates links between sequences and identifiers maintained by expert databases. More about RNAcentral →. What sequences are included in RNAcentral? Databases contain a large number of sequences annotated with non-coding features. Equence identifier ( URS.

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LINKS TO THIS WEBSITE

lncrna.big.ac.cn lncrna.big.ac.cn

ENST00000501122.2 - LncRNAWiki

http://lncrna.big.ac.cn/index.php/ENST00000501122.2

Linxia, Lina Ma (2016) lncRNA: "ENST00000501122.2" in LncRNAWiki. Available at http:/ lncrna.big.ac.cn/index.php? Title=ENST00000501122.2&oldid=1272411 (Last update: Aug 04, 2016). [ See details. This is the long isoform of Neat1. Labs working on this lncRNA. Neat1: Nuclear enriched abundant transcript 1, also known as Men (multiple endocrine neoplasia) ɛ/β orVINC (virus-inducible ncRNA). Multiple endocrine neoplasia 1 (MEN1). Long isoform - MEN beta. NEAT1 was exclusively localized in the nuclei of the ...

bioinfolab.miamioh.edu bioinfolab.miamioh.edu

Liang Lab

http://bioinfolab.miamioh.edu/bioinfolab/databasesExt.php

Access scientific knowledge, and make your research visible. Connecting Research and Researchers. Citation-based Database ( Chun Liang. Biology and Biotech News. Major Bioinformatics Web Portals. The Arabidopsis Information Resource. The Elements of Bioinformatics. Salk Arabidopsis 1001 genomes. Genomics Analysis in the Cloud. Solve puzzles for science.

iimcb.genesilico.pl iimcb.genesilico.pl

Bujnicki lab - Highlights

http://iimcb.genesilico.pl/achievements/highlights

SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...

modomics.genesilico.pl modomics.genesilico.pl

Modomics - Links

http://modomics.genesilico.pl/links

RNAMods tRNA database - a database has been discontinued. 3D Ribosomal Modification Maps database. TRNAdb 2009 Compilation of tRNA sequences and tRNA genes. Sprinzl database (replaced by tRNAdb 2009). The Genomic tRNA Database. TRNADB-CE - manually curated tRNA genes. RNABase - a database has been permanently discontinued. Rfam database of RNA families. European rRNA database - outdated and no longer updated since 2007. Auxiliary databases and tools. PDB protein structure database.

lncrna.big.ac.cn lncrna.big.ac.cn

Lnc-DLX5-3:1 - LncRNAWiki

http://lncrna.big.ac.cn/index.php/Lnc-DLX5-3:1

2015) lncRNA: "Lnc-DLX5-3:1" in LncRNAWiki. Available at http:/ lncrna.big.ac.cn/index.php? Title=Lnc-DLX5-3:1&oldid=1270892 (Last update: Aug 26, 2015). [ See details. Please input one-sentence summary here. Allelic Information and Variation. Evf-2 ncRNA and Dlx-2 proten display an intranuclear colocalization (Feng (2006). The Evf-2 5' region is both necessary and sufficient for activity. Evf2 recruitment of DLX2 and MECP2 controls the expression of targets Dlx5, Dlx6 and Gad1 through trans and cis-...

lncrna.big.ac.cn lncrna.big.ac.cn

Lnc-APBA1-3:1 - LncRNAWiki

http://lncrna.big.ac.cn/index.php/Lnc-APBA1-3:1

Lina Ma (2016) lncRNA: "Lnc-APBA1-3:1" in LncRNAWiki. Available at http:/ lncrna.big.ac.cn/index.php? Title=Lnc-APBA1-3:1&oldid=1272096 (Last update: Jun 30, 2016). [ See details. Labs working on this lncRNA. Labs working on this lncRNA. 71911594.71911783,71919852.71919993,71921064.71921206,71921770.71922016. Lina Ma (2016) lncRNA: "Lnc-APBA1-3:1" in LncRNAWiki. Available at http:/ lncrna.big.ac.cn/index.php? Title=Lnc-APBA1-3:1&oldid=1272096 (Last update: Jun 30, 2016).

lncrna.big.ac.cn lncrna.big.ac.cn

Category:Transcripts - LncRNAWiki

http://lncrna.big.ac.cn/index.php/Category:Transcripts

Here is a collection of long non-coding RNA transcripts. Pages in category "Transcripts". The following 200 pages are in this category, out of 150,678 total. Previous 200) ( next 200. Previous 200) ( next 200. Retrieved from " http:/ lncrna.big.ac.cn/index.php? This page was last modified on 17 October 2014, at 14:34. This page has been accessed 20,966 times. Content is available under Creative Commons Attribution Share Alike.

bioinfolab.muohio.edu bioinfolab.muohio.edu

Liang Lab

http://bioinfolab.muohio.edu/bioinfolab/databasesExt.php

Access scientific knowledge, and make your research visible. Connecting Research and Researchers. Citation-based Database ( Chun Liang. Biology and Biotech News. Major Bioinformatics Web Portals. The Arabidopsis Information Resource. The Elements of Bioinformatics. Salk Arabidopsis 1001 genomes. Genomics Analysis in the Cloud. Solve puzzles for science.

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RNAcentral

Your query is too short. Your query is too long. RNAcentral provides unified access to the ncRNA sequence data supplied by the Expert Databases below. Provides a comprehensive record of the worlds nucleotide sequencing information. Is a collection of non-coding RNA families represented by manually curated sequence alignments, consensus secondary structures, and predicted homologues. Is a comprehensive, integrated, non-redundant, well-annotated set of reference sequences. Is a database of genetic and mole...

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