novelsanjeevani.blogspot.com
BiOiNforMatics: Viewing Three Dimensional Structures
http://novelsanjeevani.blogspot.com/2009/04/viewing-three-dimensional-structures.html
Saturday, April 4, 2009. Viewing Three Dimensional Structures. Peng Yang, Paul A. Craig, Philip E. Bourne, and David Goodsell, San Diego Supercomputer Center, U.S.A.) - is a tool to bridge the gap between the printed literature and current Internet presentation formats. This application that can be used to prepare and present structure annotations containing formatted text, graphics, sequence data, and interactive molecular views. It require that MDL Chime be installed. . S software for looking at molecu...
proteinstructures.com
Potein Databank (PDB) Files: Coordinates, Occupancy and B-Factors
http://www.proteinstructures.com/Structure/Structure/proteinstructure-databases2.html
The Protein Databank (PDB): File Format and Content. Here we will continue the discussion of. If we need to look at the structure, we can use a graphics software. There are many programs for visualization of protein structures, which can be freely downloaded from the Internet. Examples include. REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 PROGRAM : CNS 1.0. REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-. REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,. REMARK 3 : READ,RICE,SIMONSON,WARREN.
proteinstructures.com
Protein Motifs: Connectivity Between Secondary Structure Elements
http://www.proteinstructures.com/Structure/Structure/protein-motifs.html
Structural Motifs: Connectivity Between Secondary Structure Elements. In the previous section I discussed protein. The next level of protein structure can be described as the. Probably the simplest protein structural motif is a helical bundle, shown on the schematic image below. Helix bundles are very common in protein structures and are very often found as separate domains within larger, multi-domain protein molecules. In the fold known as the. The name is based on the first protein where it was found,.
swiss-model.blogspot.com
SWISS-MODEL Blog: June 2008
http://swiss-model.blogspot.com/2008_06_01_archive.html
Sunday, 29 June 2008. DeepView version 4.0 released. DeepView version 4.0 has been released with the following features:. PC and Mac versions have been resynchronized. Support for direct login modelling submissions and result retrieval to/from the SwissModel Workspace. Enhanced user interface with taxonomy support, and new sequence alignment features. New 3D Motif Searching feature. Easy access to external user defined scripts directly from the interface. Revised Help files accessible from the interface.
miguel-quiliano-meza.blogspot.com
Bioinformatics and Computer-Assisted Molecular Design: agosto 2008
http://miguel-quiliano-meza.blogspot.com/2008_08_01_archive.html
Bioinformatics and Computer-Assisted Molecular Design. Lunes, 18 de agosto de 2008. SAR (Structure Activity Relationship). QSAR (Quantitative Structure Activity Relationship). Farmacognosia y Medicina tradicional. Publicado por Miguel Quiliano Meza - BPharm- Medicinal Chemist. Presentacion de trabajos en congresos. XVII Congreso Científico Peruano de Estudiantes de Farmacia y Bioquímica. XVI Congreso Científico Peruano de Estudiantes de Farmacia y Bioquímica. Muña) frente a Streptococcus mutans. Profesor...
dsdht.wikispaces.com
Data Science | DSDHT - Predicting drug-target interactions with 3D visualization and molecular docking
http://dsdht.wikispaces.com/Predicting+drug-target+interactions+with+3D+visualization+and+molecular+docking
Skip to main content. Get your Wikispaces Classroom now:. The easiest way to manage your class. Are there any new drugs left? Boiling the ocean - integrating everything for patient care. Boiling the ocean - integrating everything together. Gene expression data analysis. Introduction to R Shiny. Managing disease with data science. Mapping Structure to function. Predicting drug-target interactions with 3D visualization and molecular docking. Need For 3D Visualization of Proteins. Ligand comes from ligare m...
moleculardynamics.blogspot.com
∰ Molecular Dynamics: PDB Sources
http://moleculardynamics.blogspot.com/p/pdf-sources.html
8752; Molecular Dynamics. Molecular Dynamics znamenski@gmail.com. Steps to Perform a Simulation. Some ways of obtaining a coordinate file for the molecule(s) of interest are:. Hetero-Compound Information Centre: Uppsala. Information about hetero-compounds encountered in files from the Protein Data Bank. Small molecules found in the PDB. Construct yourself using molecule building software, e.g. SYBYL. Or Accelrys Discovery Studio. Open-source cross-platform molecule builder, includes support for peptides.
ch253.wordpress.com
Useful Web Links | Advanced Biochemistry-AdMU-NRLR
https://ch253.wordpress.com/useful-web-links
How to read a scientific paper: http:/ www.sciencemag.org/careers/2016/03/how-seriously-read-scientific-paper? Utm source=sciencemagazine&utm medium=facebook-text&utm campaign=seriouspaper-3110. A more humorous (or realistic? Version: http:/ www.sciencemag.org/careers/2016/01/how-read-scientific-paper. General sites for lectures, online demos, and more. TED- technology, design, and generally cool ideas: http:/ www.ted.com. NIH webcasts: http:/ videocast.nih.gov/. A more protein-centric world to explore.
