svaproject.org svaproject.org

svaproject.org

SVA project

A fast test run for impatient users. Memory configuration, reducing memory usage. Using user annotation track [GFF3/BED]. Selecting genes or regions. Exome or targeted capture sequencing. A command line tool. Updating to the latest version. Screenshot on a Dell laptop with 32-bit Win XP. Javadoc for Java developers [GUI]. Javadoc for Java developers [Command line tool]. We now have a new download site: www.OmicsExpress.com. SVA is published in Bioinformatics. Causal variants for metachondromatosis. The u...

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SVA project | svaproject.org Reviews
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A fast test run for impatient users. Memory configuration, reducing memory usage. Using user annotation track [GFF3/BED]. Selecting genes or regions. Exome or targeted capture sequencing. A command line tool. Updating to the latest version. Screenshot on a Dell laptop with 32-bit Win XP. Javadoc for Java developers [GUI]. Javadoc for Java developers [Command line tool]. We now have a new download site: www.OmicsExpress.com. SVA is published in Bioinformatics. Causal variants for metachondromatosis. The u...
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1 homepage
2 wikipedia
3 seqwiki
4 introduction
5 background
6 how it works
7 proof of concept
8 references
9 downloads
10 downloading sva
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SVA project | svaproject.org Reviews

https://svaproject.org

A fast test run for impatient users. Memory configuration, reducing memory usage. Using user annotation track [GFF3/BED]. Selecting genes or regions. Exome or targeted capture sequencing. A command line tool. Updating to the latest version. Screenshot on a Dell laptop with 32-bit Win XP. Javadoc for Java developers [GUI]. Javadoc for Java developers [Command line tool]. We now have a new download site: www.OmicsExpress.com. SVA is published in Bioinformatics. Causal variants for metachondromatosis. The u...

INTERNAL PAGES

svaproject.org svaproject.org
1

SVA project

http://www.svaproject.org/updatedb.php

A fast test run for impatient users. Memory configuration, reducing memory usage. Using user annotation track [GFF3/BED]. Selecting genes or regions. Exome or targeted capture sequencing. A command line tool. Updating to the latest version. Screenshot on a Dell laptop with 32-bit Win XP. Javadoc for Java developers [GUI]. Javadoc for Java developers [Command line tool]. Memory configuration and options to reduce memory usage. 0 For impatient users. 2 Create a project. 3 Annotate a project. Users are sugg...

2

SVA project

http://www.svaproject.org/usertrack.php

A fast test run for impatient users. Memory configuration, reducing memory usage. Using user annotation track [GFF3/BED]. Selecting genes or regions. Exome or targeted capture sequencing. A command line tool. Updating to the latest version. Screenshot on a Dell laptop with 32-bit Win XP. Javadoc for Java developers [GUI]. Javadoc for Java developers [Command line tool]. Memory configuration and options to reduce memory usage. 0 For impatient users. 2 Create a project. 3 Annotate a project. The definition...

3

SVA project

http://www.svaproject.org/userguide.php

A fast test run for impatient users. Memory configuration, reducing memory usage. Using user annotation track [GFF3/BED]. Selecting genes or regions. Exome or targeted capture sequencing. A command line tool. Updating to the latest version. Screenshot on a Dell laptop with 32-bit Win XP. Javadoc for Java developers [GUI]. Javadoc for Java developers [Command line tool]. We now have a new download site: www.OmicsExpress.com. SVA is published in Bioinformatics. Causal variants for metachondromatosis.

4

SVA project

http://www.svaproject.org/analysis.php

A fast test run for impatient users. Memory configuration, reducing memory usage. Using user annotation track [GFF3/BED]. Selecting genes or regions. Exome or targeted capture sequencing. A command line tool. Updating to the latest version. Screenshot on a Dell laptop with 32-bit Win XP. Javadoc for Java developers [GUI]. Javadoc for Java developers [Command line tool]. Memory configuration and options to reduce memory usage. 0 For impatient users. 2 Create a project. 3 Annotate a project.

5

SVA project

http://www.svaproject.org/termofuse.php

A fast test run for impatient users. Memory configuration, reducing memory usage. Using user annotation track [GFF3/BED]. Selecting genes or regions. Exome or targeted capture sequencing. A command line tool. Updating to the latest version. Screenshot on a Dell laptop with 32-bit Win XP. Javadoc for Java developers [GUI]. Javadoc for Java developers [Command line tool]. We now have a new download site: www.OmicsExpress.com. SVA is published in Bioinformatics. Causal variants for metachondromatosis. 4 An ...

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LINKS TO THIS WEBSITE

omicspace.org omicspace.org

Max Genomics - Omic Informatics Solutions for Biomedical Research

http://www.omicspace.org/jsp/software.jsp

Association Tests for Annotated Variants (ATAV). Statistical Analysis of Antigen Receptor Spectratype Data. To evalute the software. Association Tests for Annotated Variants (ATAV). ATAV is a statistical toolset that is designed to detect complex disease-associated rare genetic variants by performing association analysis, trio analysis, and/or linkage analysis on whole-genome or whole-exome sequencing data. Click here. Statistical Analysis of Antigen Receptor Spectratype Data. 2016 Max Genomics - Home.

igm.cumc.columbia.edu igm.cumc.columbia.edu

SNPExpress

http://igm.cumc.columbia.edu/SNPExpress/index.php

Duke Institute for Genome Sciences and Policy. Center for Human Genome Variation. SNPExpress on the news]. SNPExpress is a database and its user interface that we developed to permit interrogation of the effects of common SNPs on exon and transcript level expression, in two different human tissues: brain and PBMC ( Peripheral Blood Mononuclear Cell ). In addition to the pre-calculated database (released with the SNPExpress software), the SNPExpress software tool also enables one to perform :. One selecte...

omicsexpress.com omicsexpress.com

Omics Express

http://www.omicsexpress.com/sva.php

SVA: Sequence Variant Analyzer. Sva ss1.png metachondromatosis.png SVA ss8.png SVA ss2.png SVA ss7.png SVA ss3.png SVA ss9.png SVA ss4.png SVA ss10.png SVA ss5.png SVA ss13.png SVA ss6.png. SequenceVariantAnalyzer, or SVA, is a computer software project designed to annotate, visualize, and analyze the genetic variants identified through next-generation sequencing studies, including whole-genome sequencing (WGS) and exome sequencing studies. Using 7zip (freely available at: http:/ www.7-zip.org/. To extra...

igm.cumc.columbia.edu igm.cumc.columbia.edu

WGAViewer

http://igm.cumc.columbia.edu/WGAViewer/index.php

Duke Institute for Genome Sciences and Policy. Center for Human Genome Variation. Center for HIV/AIDS Vaccine Immunology (CHAVI). A fast run for impatient users]. And other genome resources has shifted from upstream SNP-selection tasks to the downstream tasks of interpreting the observed genotype-phenotype associations ( Telenti and Goldstein 2006. Extension to the WGAViewer program. The rapidly evolving high-throughput DNA sequencing technologies have now allowed the fast generation of large amount of s...

plob.org plob.org

测序数据分析工具大全 | Public Library of Bioinformatics

http://www.plob.org/2012/02/16/1722.html

Public Library of Bioinformatics. BLAT: http:/ genome.ucsc.edu/cgi-bin/hgBlat? Bowtie: http:/ bowtie-bio.sourceforge.net/index.shtml. CABOG: http:/ sourceforge.net/apps/mediawiki/wgs-assembler/index.php? CLUSTALW: http:/ www.ebi.ac.uk/Tools/msa/clustalw2. LAGAN and Shuffle-LAGAN: http:/ lagan.stanford.edu/lagan web/index.shtml. Http:/ mugsy.sourceforge.net. MUMmer: http:/ mummer.sourceforge.net. Http:/ soap.genomics.org.cn/soapdenovo.html. Velvet: http:/ www.ebi.ac.uk/ zerbino/velvet. Http:/ www.biov...

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SVA project

A fast test run for impatient users. Memory configuration, reducing memory usage. Using user annotation track [GFF3/BED]. Selecting genes or regions. Exome or targeted capture sequencing. A command line tool. Updating to the latest version. Screenshot on a Dell laptop with 32-bit Win XP. Javadoc for Java developers [GUI]. Javadoc for Java developers [Command line tool]. We now have a new download site: www.OmicsExpress.com. SVA is published in Bioinformatics. Causal variants for metachondromatosis. The u...

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The Apsara Sailing Journey

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Melissa and Dave - Adventures at Sea. Index of Interesting Blog Posts. A Lone Humpback Whale. El Salvadorian chicken boat. We can't catch a thing. Snakes on a boat Part 1. Snakes on a boat Part 2. Melissa can't fly a Spinnaker. Helping the Mexican bureaucracy. Best Land Side Trips. Swimming in the Amazon River. Paying our first bribe. Seeing our first wild monkeys. Melissa attacked by monkeys. M ost beautiful cities in the world. A bump in the night. Remind me why Greece is fun? Fire aboard the boat!