omicspace.org
Max Genomics - Omic Informatics Solutions for Biomedical Research
http://www.omicspace.org/jsp/software.jsp
Association Tests for Annotated Variants (ATAV). Statistical Analysis of Antigen Receptor Spectratype Data. To evalute the software. Association Tests for Annotated Variants (ATAV). ATAV is a statistical toolset that is designed to detect complex disease-associated rare genetic variants by performing association analysis, trio analysis, and/or linkage analysis on whole-genome or whole-exome sequencing data. Click here. Statistical Analysis of Antigen Receptor Spectratype Data. 2016 Max Genomics - Home.
igm.cumc.columbia.edu
SNPExpress
http://igm.cumc.columbia.edu/SNPExpress/index.php
Duke Institute for Genome Sciences and Policy. Center for Human Genome Variation. SNPExpress on the news]. SNPExpress is a database and its user interface that we developed to permit interrogation of the effects of common SNPs on exon and transcript level expression, in two different human tissues: brain and PBMC ( Peripheral Blood Mononuclear Cell ). In addition to the pre-calculated database (released with the SNPExpress software), the SNPExpress software tool also enables one to perform :. One selecte...
omicsexpress.com
Omics Express
http://www.omicsexpress.com/sva.php
SVA: Sequence Variant Analyzer. Sva ss1.png metachondromatosis.png SVA ss8.png SVA ss2.png SVA ss7.png SVA ss3.png SVA ss9.png SVA ss4.png SVA ss10.png SVA ss5.png SVA ss13.png SVA ss6.png. SequenceVariantAnalyzer, or SVA, is a computer software project designed to annotate, visualize, and analyze the genetic variants identified through next-generation sequencing studies, including whole-genome sequencing (WGS) and exome sequencing studies. Using 7zip (freely available at: http:/ www.7-zip.org/. To extra...
igm.cumc.columbia.edu
WGAViewer
http://igm.cumc.columbia.edu/WGAViewer/index.php
Duke Institute for Genome Sciences and Policy. Center for Human Genome Variation. Center for HIV/AIDS Vaccine Immunology (CHAVI). A fast run for impatient users]. And other genome resources has shifted from upstream SNP-selection tasks to the downstream tasks of interpreting the observed genotype-phenotype associations ( Telenti and Goldstein 2006. Extension to the WGAViewer program. The rapidly evolving high-throughput DNA sequencing technologies have now allowed the fast generation of large amount of s...
plob.org
测序数据分析工具大全 | Public Library of Bioinformatics
http://www.plob.org/2012/02/16/1722.html
Public Library of Bioinformatics. BLAT: http:/ genome.ucsc.edu/cgi-bin/hgBlat? Bowtie: http:/ bowtie-bio.sourceforge.net/index.shtml. CABOG: http:/ sourceforge.net/apps/mediawiki/wgs-assembler/index.php? CLUSTALW: http:/ www.ebi.ac.uk/Tools/msa/clustalw2. LAGAN and Shuffle-LAGAN: http:/ lagan.stanford.edu/lagan web/index.shtml. Http:/ mugsy.sourceforge.net. MUMmer: http:/ mummer.sourceforge.net. Http:/ soap.genomics.org.cn/soapdenovo.html. Velvet: http:/ www.ebi.ac.uk/ zerbino/velvet. Http:/ www.biov...