wtccc.org.uk

Wellcome Trust Case Control Consortium - WTCCC

The WTCCC aims to complete the initial survey of common variation for association to disease, and to examine the replicated association signals detected through resequencing and fine-mapping. The WTCCC will also carry out a major experiment to address the genome-wide measurement of copy number variation. CNV) within the 19,000 samples tested in phase one (16,000 disease samples and 3,000 common controls) and additional samples from breast cancer. Further information. Genotype data from WTCCC1 is availabl...

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Wellcome Trust Case Control Consortium - WTCCC | wtccc.org.uk Reviews

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The WTCCC aims to complete the initial survey of common variation for association to disease, and to examine the replicated association signals detected through resequencing and fine-mapping. The WTCCC will also carry out a major experiment to address the genome-wide measurement of copy number variation. CNV) within the 19,000 samples tested in phase one (16,000 disease samples and 3,000 common controls) and additional samples from breast cancer. Further information. Genotype data from WTCCC1 is availabl...

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1 wellcome trust

2 case control consortium

3 wtccc1

4 wtccc2

5 wtccc3

6 press and publications

7 publications and presentations

8 data access

9 access to data

10 approved applications

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wellcome trust,case control consortium,wtccc1,wtccc2,wtccc3,press and publications,publications and presentations,data access,access to data,approved applications,cdac members,data formats,open access,available software,participant access,overview

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Wellcome Trust Case Control Consortium - WTCCC | wtccc.org.uk Reviews

https://wtccc.org.uk

The WTCCC aims to complete the initial survey of common variation for association to disease, and to examine the replicated association signals detected through resequencing and fine-mapping. The WTCCC will also carry out a major experiment to address the genome-wide measurement of copy number variation. CNV) within the 19,000 samples tested in phase one (16,000 disease samples and 3,000 common controls) and additional samples from breast cancer. Further information. Genotype data from WTCCC1 is availabl...

INTERNAL PAGES

wtccc.org.uk

1

Data formats and interpretation - WTCCC

http://www.wtccc.org.uk/info/data_formats.html

Data formats and interpretation. Flatfiles Readable Ex Silico - version 1.0. These formats are intended to be both readable by the human eye as well as easily parsed computationally. This format is distinguished by the characters 'fs1' in the filenames. The following is a brief example of the genotype data format:. SNP SAMPLE GENOTYPE SCORE rs1234567 WTCCC12345 CC 0.9262 rs1234568 WTCCC12345 TC 0.8650 rs1234569 WTCCC12345 AA 0.9117. All cohorts come with information describing each sample. These file...

2

Publications - WTCCC

http://www.wtccc.org.uk/info/publications_and_presentations.html

Relevant publications and presentations. Variants in ADCY5 and near CCNL1 are associated with fetal growth and birth weight. Genetic Investigation of ANthropometric Traits (GIANT) Consortium. Meta-Analyses of Glucose and Insulin-related traits Consortium. Wellcome Trust Case Control Consortium. Early Growth Genetics (EGG) Consortium. DOI: 10.1038/ng.567. Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Wellcome Trust Case Control Consortium. Genome...

3

Press Release - 28th September 2005 - WTCCC

http://www.wtccc.org.uk/info/050928.html

Press Release - 28th September 2005. Researchers set to find 'genetic signposts' for eight diseases - The Wellcome Trust Case Control Consortium (WTCCC). Researchers set to find 'genetic signposts' for eight diseases. One of the biggest projects ever undertaken to identify the genetic variations that may predispose people to or protect them from eight major diseases is to begin after receiving almost £9 million of funding from the Wellcome Trust. Researchers will analyse over 19,000 DNA samples - two tho...

4

Available software - WTCCC

http://www.wtccc.org.uk/info/software.html

Software developed in the course of WTCCC is available for download. Technical queries and feedback should be sent directly to the authors. Hin-Tak Leung, work undertaken whilst at Cambridge Institute for Medical Research). Various normalisation-related programs for pre-processing Affymetrix 500K chip data prior to calling by Chiamo . Version 2007-01-09. Users will also need to download the 500K Chip Definition (CDF) files from Affymetrix. Department of Statistics, University of Oxford).

5

FAQ - WTCCC

http://www.wtccc.org.uk/info/faq.html

I have some questions regarding the various forms and agreements. Whom should I contact? For questions about the access procedure and data use policies, please contact cdac@sanger.ac.uk. For queries regarding the web site and the genotyping data, please fill in the feedback form. New queries should preferablly be sent via this method rather than directly to a member of WTCCC staff. For information regarding the European Genotype Archive, please contact ega-admin@ebi.ac.uk. If you are not under the direct...

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genomewiki.ucsc.edu

Medical Sequencing Data - Genomewiki

http://genomewiki.ucsc.edu/index.php/Medical_Sequencing_Data

Major Types of information. Some Other Database Entities. Existing Genotype/Phenotype Web Databases. Some Large Scale Studies Currently in Progress. Mock Up of Phenotype Sorter. Mock Up of Genotype/Phenotype Track. Some Thoughts from Fan. In a few years . E/R (Object Orientated) based data model. Data Security and Privacy. A showstopper or an opportunity? A secure server and a few authorized users. If we have more hands. How we go about it? Major Types of information. Location (zip code would be great).

gentrepid.org

Gentrepid

http://gentrepid.org/GWAS_predictions.php

Candidate disease gene predictions for the WTCCC study. This page uses GWAS data from the WTCCC 1. Study (WTCCC, 2007). The protocol used to generate the candidate disease genes is described in Ballouz et al. (2011). Select a SNP-gene mapping. Type in word(s) to filter on:. Sorry, no results.

genomewiki.cse.ucsc.edu

Medical Sequencing Data - Genomewiki

http://genomewiki.cse.ucsc.edu/index.php/Medical_Sequencing_Data

Major Types of information. Some Other Database Entities. Existing Genotype/Phenotype Web Databases. Some Large Scale Studies Currently in Progress. Mock Up of Phenotype Sorter. Mock Up of Genotype/Phenotype Track. Some Thoughts from Fan. In a few years . E/R (Object Orientated) based data model. Data Security and Privacy. A showstopper or an opportunity? A secure server and a few authorized users. If we have more hands. How we go about it? Major Types of information. Location (zip code would be great).

www-gene.cimr.cam.ac.uk

JDRF/Wellcome Trust DIL: Introduction & Staff

https://www-gene.cimr.cam.ac.uk/staff

Diabetes and Inflammation Laboratory. Diabetes and Inflammation Laboratory. Job vacancies and studentships. Research environment and aims. The JDRF/Wellcome Trust DIL has also been centrally involved in the establishment and success of two major international consortia, the NIDDK- and JDRF-funded Type 1 Diabetes Genetics Consortium. And the Wellcome Trust Case-Control Consortium. The JDRF/Wellcome Trust DIL is embedded in one of the most successful medical research institutes, internationally, the Cambri...

amedeoprize.com

Amedeo Prize | The Wellcome Trust Case Control Consortium (WTCCC)

http://www.amedeoprize.com/ap/wtccc.htm

The Wellcome Trust Case Control Consortium (WTCCC). Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Medical Article of the Year 2008. Paul R. Burton. David G. Clayton. Dominic P. Kwiatkowski. Mark I. McCarthy. Willem H. Ouwehand. Nilesh J. Samani. John A. Todd. Peter Donnelly, (Chair). Data and Analysis Committee. Jeffrey C. Barrett. Paul R. Burton. Jonathan L. Marchini. Andrew P. Morris. Chris C. A. Spencer. Martin D. Tobin. Lon R Cardon, (Co-Chair).

ibdgenetics.org

IBDGenetics - Groups involved

http://www.ibdgenetics.org/groups.html

IIBDGC 16 Collaborating Countries. Contact details of the individual groups are listed below. Please direct International IBD Genetics Consortium enquiries to enquiries@ibdgenetics.org. The UK IBD Genetics Consortium. Http:/ www.ibdresearch.co.uk/. Please contact UKIBDGC at UKIBDGC_enquiries@sanger.ac.uk. Cambridge : Miles Parkes, James Lee. Edinburgh : Jack Satsangi, Charlie Lees, Elaine Nimmo. Exeter : Tariq Ahmad, Cathryn Edwards. Oxford : Alison Simmons. Newcastle: John Mansfield, Chris Lamb. The NID...

news.bbc.co.uk

BBC NEWS | Health | Gut disorder 'blamed on leaks'

http://news.bbc.co.uk/2/hi/health/8358863.stm

Skip to local navigation. Skip to bbc.co.uk navigation. Skip to bbc.co.uk search. BBC News Updated every minute of every day. Also in the news. Page last updated at. 17:59 GMT, Sunday, 15 November 2009. E-mail this to a friend. Gut disorder 'blamed on leaks'. Ulcerative colitis is currently incurable. Genetic defects leading to a leaky gut are a key cause of the inflammatory disorder ulcerative colitis, UK research suggests. The Nature Genetics study is based on an analysis of the genes of 12,700 people.

phenomics.cn

Useful links - Phenomics.cn

http://www.phenomics.cn/links.php

International Plant Phenomics Network. IPPN is an international consortium that will boost plant phenotyping science by developing novel technologies and concepts used for the application of plant production and the analysis of ecosystem performance. German Plant Phenotyping Network. DPPN is a Germany funded project that partners undertake a joint research program and share their phenotyping infrastructure within networking activities. PHEOME, launched in 2012, is a project funded by French investment fo...

donieconwayaddress.wordpress.com

Health News update | Donie Conway's Ireland News

https://donieconwayaddress.wordpress.com/health-issues

Donie Conway's Ireland News. Just another WordPress.com site. Donie’s Ireland 5 Star Spots. Green News & Issues. Tech Solutions and Info News. Tourism Ire. West. What’s on this week. Z Cuddly Cute Animals of the World. Wednesday 31st July 2013. 10 ways to avoid diabetes complications. Diabetes care is a lifelong responsibility. Consider these 10 strategies to prevent diabetes complications. Subscribe to our Controlling Your Diabetes. E-newsletter to stay up to date on diabetes topics. Range Don’t b...

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wtccc.org.uk

Wellcome Trust Case Control Consortium - WTCCC

The WTCCC aims to complete the initial survey of common variation for association to disease, and to examine the replicated association signals detected through resequencing and fine-mapping. The WTCCC will also carry out a major experiment to address the genome-wide measurement of copy number variation. CNV) within the 19,000 samples tested in phase one (16,000 disease samples and 3,000 common controls) and additional samples from breast cancer. Further information. Genotype data from WTCCC1 is availabl...

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