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Information Commons for Rice

Information Commons for Rice. Committee and Advisory Board. Working Groups and Projects. Last update: May 5, 2015 [5add976]. Is not only an important model organism for monocot plants and cereals but also the most widely consumed staple food for a large part of the world's human population. With the increasing volume of various types of omics data, an integrated database incorporating rice omics data is of great significance for the rice research community.

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Beijing Institute of Genomics, Chinese Academy of Sciences (CAS)

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Beijing Institute of Genomics, Chinese Academy of Sciences (CAS)

Li Ang

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Information Commons for Rice | ic4r.org Reviews

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Information Commons for Rice. Committee and Advisory Board. Working Groups and Projects. Last update: May 5, 2015 [5add976]. Is not only an important model organism for monocot plants and cereals but also the most widely consumed staple food for a large part of the world's human population. With the increasing volume of various types of omics data, an integrated database incorporating rice omics data is of great significance for the rice research community.

<META> KEYWORDS

1 browse

2 publications

3 people

4 tutorial

5 developer's api

6 overview

7 welcome to ic4r

8 rice

9 oryza sativa

10 rice expression database

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Page content here

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browse,publications,people,tutorial,developer's api,overview,welcome to ic4r,rice,oryza sativa,rice expression database,plant homolog database,rice variation database,rice literature miner,ricewiki,participating institutions,global visitors

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Information Commons for Rice | ic4r.org Reviews

https://ic4r.org

Information Commons for Rice. Committee and Advisory Board. Working Groups and Projects. Last update: May 5, 2015 [5add976]. Is not only an important model organism for monocot plants and cereals but also the most widely consumed staple food for a large part of the world's human population. With the increasing volume of various types of omics data, an integrated database incorporating rice omics data is of great significance for the rice research community.

SUBDOMAINS

wiki.ic4r.org

RiceWiki

Contribute your efforts, further our knowledge. A project of IC4R. Information Commmons for Rice). As well as a component of ScienceWikis. Is a wiki-based, publicly editable and open-content platform for community curation of genes and Omics Knowledge in rice. Viz, a community-curated resource of rice knowledge. Unlike conventional biological databases based on expert curation, RiceWiki harnesses collective intelligence. To collect, edit and annotate information about rice, quantifies users' contributions.

homolog.ic4r.org

IC4R Homolog Database

Last update: May 9, 2015. Plant Homolog Database (PHD) is a database composed of plant homologous genes. It combines phylogenetic and heuristic best-match approaches, yielding an accurate collection of more than 14,000 homologous groups covering multiple different species (including rice, Arabidopsis thaliana, tomato, maize, sorghum, etc). Or Species Oryza sativa subsp. japonica. O sativa subsp. japonica. O sativa subsp. indica.

INTERNAL PAGES

ic4r.org

1

Information Commons for Rice

http://www.ic4r.org/committee

Information Commons for Rice. Committee and Advisory Board. Working Groups and Projects. Last update: May 5, 2015 [0e3c969]. Committee and Advisory Board. Beijing Institute of Genomics, Chinese Academy of Sciences. Beijing Institute of Genomics, Chinese Academy of Sciences. Beijing Institute of Genomics, Chinese Academy of Sciences. Beijing Institute of Genomics, Chinese Academy of Sciences. Beijing Institute of Genomics, Chinese Academy of Sciences. Huazhong University of Science and Technology.

2

Information Commons for Rice

http://www.ic4r.org/working_groups

Information Commons for Rice. Committee and Advisory Board. Working Groups and Projects. Last update: May 5, 2015 [0e3c969]. Working Groups and Projects. Beijing Institute of Genomics, Chinese Academy of Sciences. Beijing Institute of Genomics, Chinese Academy of Sciences. Beijing Institute of Genomics, Chinese Academy of Sciences. Huazhong University of Science and Technology.

3

Information Commons for Rice

http://www.ic4r.org/genes/Os01g0192000

Information Commons for Rice. Committee and Advisory Board. Working Groups and Projects. Last update: May 5, 2015 [0e3c969]. LOC Os01g09620; P0671B11.13. Zinc finger CCCH domain-containing protein 2. Protein DELAY OF THE ONSET OF SENESCENCE. View in new window]. View in new window]. View in new window]. Phospho-sites: [View in new window]. Ubiquitin and ubiquitin-like conjugation: No result. Eukaryotic protein kinases and protein phosphatases: No result. View in new window]. View in new window].

4

Information Commons for Rice

http://www.ic4r.org/genes/Os01g0883800

Information Commons for Rice. Committee and Advisory Board. Working Groups and Projects. Last update: May 5, 2015 [0e3c969]. 20ox2; C20ox2; GA20; Sd-1; LOC Os01g66100; B1065E10.46. Gibberellin 20 oxidase 2. Gibberellin C-20 oxidase 2. View in new window]. View in new window]. View in new window]. Phospho-sites: [View in new window]. Ubiquitin and ubiquitin-like conjugation: No result. Eukaryotic protein kinases and protein phosphatases: No result. View in new window]. View in new window].

5

Information Commons for Rice

http://www.ic4r.org/about/terms

Information Commons for Rice. Committee and Advisory Board. Working Groups and Projects. Last update: May 5, 2015 [0e3c969]. As a web-based resource, IC4R is primarily designed for users interacting with the resource on a. Page-by-page basis. Users wishing to automate data retrieval from IC4R should direct their scripts to the data mining server. Instead of the primary IC4R server. In consideration of other users,we request that any script - whether.

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homolog.ic4r.org

IC4R Homolog Database

http://homolog.ic4r.org/groups

Last update: May 9, 2015.

homolog.ic4r.org

IC4R Homolog Database

http://homolog.ic4r.org/specieses/ORYBR

Last update: May 9, 2015.

homolog.ic4r.org

IC4R Homolog Database

http://homolog.ic4r.org/genes/Os09g0536700

Last update: May 9, 2015. Oryza sativa subsp. japonica. Homolog List (Total: 11, bootstrap 0.8). Oryza sativa subsp. indica. O sativa subsp. japonica. O sativa subsp. indica. Draw the tree with:. Oryza sativa subsp. indica. Oryza sativa subsp. japonica.

homolog.ic4r.org

IC4R Homolog Database

http://homolog.ic4r.org/specieses/BRARP

Last update: May 9, 2015. Brassica rapa (Chinese cabbage).

alz.big.ac.cn

AlzBase

http://alz.big.ac.cn/alzBase/aboutus

Eb service for B. Parallel Alignment and back-. Eb service for B. We are interested in systems biology of Alzheimer’s disease. Our recent publications in this area are listed below. 10 G-C. Han, J.-Y.Sun, J.-J.Wang, Z.-X.Bai, F.-H.Songand H.-X.Lei*.(2014) Genomics in neurological disorders.Genomics Proteomics and Bioinformatics12: 156-163. 6 J-J Wang, X.-M.Feng, Z.-X.Bai, L.-W.Jin, Y. Duan and H.-X.Lei*.(2014) Chromosome 19p in Alzheimer’s disease: when genome meet...5 G-C Han, J.-J.Wang, F. ...4 J-Y Sun...

homolog.ic4r.org

IC4R Homolog Database

http://homolog.ic4r.org/specieses/ORYME

Last update: May 9, 2015.

homolog.ic4r.org

IC4R Homolog Database

http://homolog.ic4r.org/specieses/POPTR

Last update: May 9, 2015. Populus trichocarpa (Western balsam poplar).

homolog.ic4r.org

IC4R Homolog Database

http://homolog.ic4r.org/species/index

Last update: May 9, 2015. Oryza sativa subsp. indica. Oryza sativa subsp. japonica.

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Information Commons for Rice

Information Commons for Rice. Committee and Advisory Board. Working Groups and Projects. Last update: May 5, 2015 [5add976]. Is not only an important model organism for monocot plants and cereals but also the most widely consumed staple food for a large part of the world's human population. With the increasing volume of various types of omics data, an integrated database incorporating rice omics data is of great significance for the rice research community.

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