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PrimesDB portal to protein-protein interaction networks: Home

Is a systems biology platform that is being developed to enable the collection, integration and analysis of state-of-the-art genomics, proteomics and mathematical modelling data being generated by the PRIMES project. PRIMES is investigating the role of protein interaction machines in oncogenic signalling with a particular focus on the EGFR network. PRIMESDB. Provides a centralised knowledgebase and analysis platform for cancer protein interaction networks. Bait Proteins (Click to expand). Log in to search.

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Kenneth Bryan

Systems Biology/Immunol●●●●●●●●●●●●●●●●●●●●●●●ce Research Department,

AGRIC, Tea●●●●●●●●●●e, Dunsany

Co.●●●ath , Co. Meath, -

IE

353.0●●●●●26719

ke●●●●●●●●●●●@teagasc.ie

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Kenneth Bryan

Systems Biology/Immunol●●●●●●●●●●●●●●●●●●●●●●●ce Research Department,

AGRIC, Tea●●●●●●●●●●e, Dunsany

Co.●●●ath , Co. Meath, -

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ke●●●●●●●●●●●@teagasc.ie

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PrimesDB portal to protein-protein interaction networks: Home | primesdb.com Reviews

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Is a systems biology platform that is being developed to enable the collection, integration and analysis of state-of-the-art genomics, proteomics and mathematical modelling data being generated by the PRIMES project. PRIMES is investigating the role of protein interaction machines in oncogenic signalling with a particular focus on the EGFR network. PRIMESDB. Provides a centralised knowledgebase and analysis platform for cancer protein interaction networks. Bait Proteins (Click to expand). Log in to search.

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1 primesdb

2 primes project

3 the team

4 resources

5 egfr overview

6 egfr core network

7 psi mi standards

8 primes ppi data

9 molecules

10 interactions

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PrimesDB portal to protein-protein interaction networks: Home | primesdb.com Reviews

https://primesdb.com

Is a systems biology platform that is being developed to enable the collection, integration and analysis of state-of-the-art genomics, proteomics and mathematical modelling data being generated by the PRIMES project. PRIMES is investigating the role of protein interaction machines in oncogenic signalling with a particular focus on the EGFR network. PRIMESDB. Provides a centralised knowledgebase and analysis platform for cancer protein interaction networks. Bait Proteins (Click to expand). Log in to search.

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primesdb.com

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PrimesDB portal to protein-protein interaction networks: PrimesProject

http://www.primesdb.com/pages/primesProject

PRIMES: Protein interaction machines in oncogenic EGF receptor signalling. PRIMES: Protein interaction machines in oncogenic EGF receptor signalling. PRIMES is a 13 Partner Collaborative European FP7 - HEALTH - 2011 project in the theme "Proteins and their interactions in health and disease". PRIMES investigates the following:. How do protein interactions contribute to the generation of biological specificity in signalling? How do pathogenetic perturbations affect protein interaction networks? Validate t...

2

PrimesDB portal to protein-protein interaction networks: ResultIndex

http://www.primesdb.com/pages/resultIndex

The pipeline takes each protein in the current EGFR/ERRB core network and queries all PSICQUIC databases for all interactions involving this protein. This network can be downloaded in several formats from here. The PRIMESDB team has integrated the EGFR network information with:. A) Protein structure information from the PDB database (all nodes with at least a partial crystal structure in PDB for the human protein are shown). B) Drug target information from DrugBank. What are the 198 EGFR core proteins?

3

PrimesDB portal to protein-protein interaction networks: PsiMiStandards

http://www.primesdb.com/pages/psiMiStandards

Proteomics Standards Initiative (PSI). HUPO-PSI defines community standards for data representation in proteomics to facilitate data comparision, exchange and verification. It was founded at the HUPO meeting in Washington, April 28-29, 2002. Molecular Interaction XML Format Documentation. The PSI MI format is a data exchange format for molecular interaction. It is not a proposed database structure. OLS) - Ontology Lookup Service. It is a spin-off of the PRIDE project, which required a centralized query i...

4

PrimesDB portal to protein-protein interaction networks: Primesdb

http://www.primesdb.com/pages/primesdb

Is a systems biology analysis platform that is being developed to enable the collection, annotation, integration and analysis of proteomics, imaging, structural biology and computational and mathematical modelling data being generated by the PRIMES project. It will provide a "one-stop-shop" for knowledge and analysis of the EGFR/ERBB. Network for both the project collaborators and the wider scientific community. Is being developed by the Lynn EMBL Australia Group at SAHMRI. Linking protein interaction da...

5

PrimesDB portal to protein-protein interaction networks: AboutTheTeam

http://www.primesdb.com/pages/aboutTheTeam

Associate Prof. David Lynn. A systems biology platform for innate immunity networks. Post-Doctor/Research Fellow as Bioinformatician within 20 member Cancer Genetics Group (2008-Present):. Classification,Feature Selection, Visualization, Data Integration of high-throughput genomic data (ChIP/MeDIP-chip;array-CGH);Gene Expression Data;High-throughput miRNA Expression (RT-PCR) data; Survival and Statistical Analysis; miRNA function, target prediction and transfection data analysis; Biological Sequence Anal...

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primesdb.com

PrimesDB portal to protein-protein interaction networks: Home

Is a systems biology platform that is being developed to enable the collection, integration and analysis of state-of-the-art genomics, proteomics and mathematical modelling data being generated by the PRIMES project. PRIMES is investigating the role of protein interaction machines in oncogenic signalling with a particular focus on the EGFR network. PRIMESDB. Provides a centralised knowledgebase and analysis platform for cancer protein interaction networks. Bait Proteins (Click to expand). Log in to search.

primesdb.org

PrimesDB portal to protein-protein interaction networks: Home

Is a systems biology platform that is being developed to enable the collection, integration and analysis of state-of-the-art genomics, proteomics and mathematical modelling data being generated by the PRIMES project. PRIMES is investigating the role of protein interaction machines in oncogenic signalling with a particular focus on the EGFR network. PRIMESDB. Provides a centralised knowledgebase and analysis platform for cancer protein interaction networks. Bait Proteins (Click to expand). Log in to search.

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